miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32820 5' -55.3 NC_007346.1 + 221572 0.66 0.993624
Target:  5'- cAUCGggUgCGCCaACgGCGGcaccGCCCAu -3'
miRNA:   3'- aUAGCuuA-GUGGcUGgUGCCu---CGGGU- -5'
32820 5' -55.3 NC_007346.1 + 92588 0.66 0.992728
Target:  5'- aUAUUGaAAUUACCGACgAUGGAGUaguaCAa -3'
miRNA:   3'- -AUAGC-UUAGUGGCUGgUGCCUCGg---GU- -5'
32820 5' -55.3 NC_007346.1 + 364510 0.66 0.991735
Target:  5'- aGUCaaGGAUCuuuCCGACCGCGG-GCUg- -3'
miRNA:   3'- aUAG--CUUAGu--GGCUGGUGCCuCGGgu -5'
32820 5' -55.3 NC_007346.1 + 98709 0.68 0.97491
Target:  5'- -uUUGAAcCGCCGGCgGCGccugcGAGCCCGu -3'
miRNA:   3'- auAGCUUaGUGGCUGgUGC-----CUCGGGU- -5'
32820 5' -55.3 NC_007346.1 + 195951 0.68 0.969126
Target:  5'- gAUCGAGUCACCGuggcaaauuuguCUuuguggcaGCGGAGCCa- -3'
miRNA:   3'- aUAGCUUAGUGGCu-----------GG--------UGCCUCGGgu -5'
32820 5' -55.3 NC_007346.1 + 306707 0.7 0.936604
Target:  5'- -uUCGccGUCGCCGccGCCGCcGAGCCCGc -3'
miRNA:   3'- auAGCu-UAGUGGC--UGGUGcCUCGGGU- -5'
32820 5' -55.3 NC_007346.1 + 309273 0.7 0.936604
Target:  5'- -uUCGccGUCGCCGccGCCGCcGAGCCCGc -3'
miRNA:   3'- auAGCu-UAGUGGC--UGGUGcCUCGGGU- -5'
32820 5' -55.3 NC_007346.1 + 135657 1.07 0.01239
Target:  5'- uUAUCGAAUCACCGACCACGGAGCCCAu -3'
miRNA:   3'- -AUAGCUUAGUGGCUGGUGCCUCGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.