Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32822 | 3' | -49.8 | NC_007346.1 | + | 171190 | 1.15 | 0.013404 |
Target: 5'- aCCUAUCCAAGGUCUCCACCAAGAUGCu -3' miRNA: 3'- -GGAUAGGUUCCAGAGGUGGUUCUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 361381 | 0.76 | 0.945324 |
Target: 5'- cCCgUGUCCAGGGgcacCUCCcaACCGGGAUGa -3' miRNA: 3'- -GG-AUAGGUUCCa---GAGG--UGGUUCUACg -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 188208 | 0.72 | 0.99123 |
Target: 5'- -aUAUCCGGGcaaaUCUCCACCGAGAagauuUGUa -3' miRNA: 3'- ggAUAGGUUCc---AGAGGUGGUUCU-----ACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 171138 | 0.71 | 0.993882 |
Target: 5'- aCCaUGUCCAAgGGUCUUaagaaguacauucgUACCAAGAgugGCa -3' miRNA: 3'- -GG-AUAGGUU-CCAGAG--------------GUGGUUCUa--CG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 353244 | 0.71 | 0.994682 |
Target: 5'- aCUGUCCAugaucuuuucaccgAGGacaUUUCCACCuuGGUGCa -3' miRNA: 3'- gGAUAGGU--------------UCC---AGAGGUGGuuCUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 127719 | 0.7 | 0.997996 |
Target: 5'- ----aCCAAGuccGUCUCCACCAAGuccGCu -3' miRNA: 3'- ggauaGGUUC---CAGAGGUGGUUCua-CG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 51154 | 0.7 | 0.998583 |
Target: 5'- uCCUAUCCAAGGUg-CCAUacc-AUGCg -3' miRNA: 3'- -GGAUAGGUUCCAgaGGUGguucUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 268352 | 0.69 | 0.999017 |
Target: 5'- -gUGUCCGAcuGGUagaCCACCGcGAUGCa -3' miRNA: 3'- ggAUAGGUU--CCAga-GGUGGUuCUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 180246 | 0.68 | 0.999711 |
Target: 5'- aUUGUCCAGugcggcccacGGUCUCCGCCuucacUGCc -3' miRNA: 3'- gGAUAGGUU----------CCAGAGGUGGuucu-ACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 116512 | 0.68 | 0.999753 |
Target: 5'- -aUAUCCAccGGUauaUCCACCGccuguuauacuugcAGAUGCu -3' miRNA: 3'- ggAUAGGUu-CCAg--AGGUGGU--------------UCUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 169422 | 0.68 | 0.999769 |
Target: 5'- ---uUCCA---UCUCCACCGAuGAUGCc -3' miRNA: 3'- ggauAGGUuccAGAGGUGGUU-CUACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 120636 | 0.68 | 0.999817 |
Target: 5'- uCUUGUUUAcgauGGUCUUCGCCAAGAa-- -3' miRNA: 3'- -GGAUAGGUu---CCAGAGGUGGUUCUacg -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 66556 | 0.67 | 0.999938 |
Target: 5'- aCCUGUgUAacagcagguucaaagGGGUCUCCGCUAAauauUGCu -3' miRNA: 3'- -GGAUAgGU---------------UCCAGAGGUGGUUcu--ACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 163452 | 0.66 | 0.999987 |
Target: 5'- aUUGUCCAGGuGUCUC-ACCcGGuucUGCg -3' miRNA: 3'- gGAUAGGUUC-CAGAGgUGGuUCu--ACG- -5' |
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32822 | 3' | -49.8 | NC_007346.1 | + | 353589 | 0.66 | 0.999987 |
Target: 5'- aCUUcUCCGAuGUCUCCACCcugGAGAUc- -3' miRNA: 3'- -GGAuAGGUUcCAGAGGUGG---UUCUAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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