miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 3' -63 NC_007346.1 + 401525 0.68 0.703165
Target:  5'- gUgCACCGCCGCCUgcaGCUGCCa--- -3'
miRNA:   3'- gAgGUGGCGGCGGGag-UGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198203 0.68 0.703165
Target:  5'- -gCCACCGCCaccaucGCCUcCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGG------CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 57879 0.68 0.694074
Target:  5'- -gCCACCGCCGUuaUUGCCGCCg--- -3'
miRNA:   3'- gaGGUGGCGGCGggAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 305435 0.68 0.694074
Target:  5'- nUCCGCCGCCcccuucaCUCUCACCGUCUc-- -3'
miRNA:   3'- gAGGUGGCGGc------GGGAGUGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 308342 0.69 0.666573
Target:  5'- cCUCCACCaCCauuGCCCcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGG---CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198250 0.69 0.657352
Target:  5'- uCUCCGCCaCCGCCaucgcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGGCGGga---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 310218 0.69 0.651811
Target:  5'- uCUCCACCGCCcCCUUCacucuccccaucuccACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGGAG---------------UGGCGGacua -5'
32823 3' -63 NC_007346.1 + 309633 0.69 0.648114
Target:  5'- uCUCCGCCGCCaUCUcCGCCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 58594 0.7 0.624063
Target:  5'- cCUCCGCCGCCGCCaucucccccaccaucUcccccaccuccgUCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGCGG---------------G------------AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 59731 0.7 0.620364
Target:  5'- -aCCuCCGCCGCCUUuacCACCGCCa--- -3'
miRNA:   3'- gaGGuGGCGGCGGGA---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198145 0.7 0.620364
Target:  5'- uCUCCACCaCCGCCaucucCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGcGGCGGga---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 198295 0.7 0.620364
Target:  5'- uCUCCACCGCCaCCaucucCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGga---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 308500 0.7 0.61112
Target:  5'- aCUCCACCGCCcccaccccCCCUCGCCcCCUu-- -3'
miRNA:   3'- -GAGGUGGCGGc-------GGGAGUGGcGGAcua -5'
32823 3' -63 NC_007346.1 + 306861 0.7 0.61112
Target:  5'- uCUCCACCGCCaUCUcCGCCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 189511 0.7 0.60189
Target:  5'- -aUCACCGCCGCCgUCACCaCUUGc- -3'
miRNA:   3'- gaGGUGGCGGCGGgAGUGGcGGACua -5'
32823 3' -63 NC_007346.1 + 57189 0.7 0.592677
Target:  5'- -aCCACCuCCGCCaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGcGGCGGgAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 188949 0.7 0.592677
Target:  5'- -aCCACCGCCaCCaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGcGGgAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 305327 0.7 0.592677
Target:  5'- uCUCUACCGCC-CCCUU-CCGCCUc-- -3'
miRNA:   3'- -GAGGUGGCGGcGGGAGuGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 166037 0.7 0.592677
Target:  5'- gCUCCAUCGCCaCCaccaUCGCCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcGGg---AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 311297 0.7 0.583489
Target:  5'- uCUCCACCGCCaccaccGCCaC-CACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGG------CGG-GaGUGGCGGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.