Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32826 | 3' | -46.2 | NC_007346.1 | + | 201758 | 0.67 | 1 |
Target: 5'- aAAAgUCGGCGGGuucaaauccGGUUG-GCAUGCCa -3' miRNA: 3'- cUUUgAGCUGUUU---------CCAACaUGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 91368 | 0.7 | 0.999959 |
Target: 5'- ---uUUCGACAuguGGGgaagUG-ACACGCCa -3' miRNA: 3'- cuuuGAGCUGUu--UCCa---ACaUGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 86531 | 0.69 | 0.999994 |
Target: 5'- --cGCUCGGCAuggaggacgacGAGGUUGga-GCGCg -3' miRNA: 3'- cuuUGAGCUGU-----------UUCCAACaugUGCGg -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 295143 | 0.68 | 1 |
Target: 5'- gGAAACggCGGCGGAGGUacugcgGUGCucccugggucacacaAUGCCa -3' miRNA: 3'- -CUUUGa-GCUGUUUCCAa-----CAUG---------------UGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 266646 | 0.67 | 1 |
Target: 5'- -uGACUCugguucaaucucauGAUAAAGGUcgGUAUACGCa -3' miRNA: 3'- cuUUGAG--------------CUGUUUCCAa-CAUGUGCGg -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 178485 | 0.67 | 1 |
Target: 5'- cAGACUaCGGCGAcGGGgaGUACACGgUCa -3' miRNA: 3'- cUUUGA-GCUGUU-UCCaaCAUGUGC-GG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 139965 | 0.67 | 1 |
Target: 5'- uGAAUUUGACAguuuaAAGGUgacGUAacUACGCCa -3' miRNA: 3'- cUUUGAGCUGU-----UUCCAa--CAU--GUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 121183 | 0.67 | 1 |
Target: 5'- uGAACUCGuCAuacGaUGUACACGUCa -3' miRNA: 3'- cUUUGAGCuGUuucCaACAUGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 226756 | 0.67 | 1 |
Target: 5'- gGAAGCauugUCGACAuggcAGGg-GUGCGgGCCg -3' miRNA: 3'- -CUUUG----AGCUGUu---UCCaaCAUGUgCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 249003 | 0.73 | 0.999521 |
Target: 5'- aGAAACUCGACGAuGGUUGcgguaACGgCg -3' miRNA: 3'- -CUUUGAGCUGUUuCCAACaug--UGCgG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 230692 | 1.15 | 0.033562 |
Target: 5'- gGAAACUCGACAAAGGUUGUACACGCCg -3' miRNA: 3'- -CUUUGAGCUGUUUCCAACAUGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 282371 | 0.67 | 1 |
Target: 5'- uGAGCUuacUGACAAGGGUauuaaACACGCUu -3' miRNA: 3'- cUUUGA---GCUGUUUCCAaca--UGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 214290 | 0.66 | 1 |
Target: 5'- gGAAGCUCG-CAGaaaaagucGGGUgGgaucGCAUGCCa -3' miRNA: 3'- -CUUUGAGCuGUU--------UCCAaCa---UGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 40835 | 0.66 | 1 |
Target: 5'- -cAACUCGACAAuggauGGGagacuaacauuuUUGUaGCGCGCg -3' miRNA: 3'- cuUUGAGCUGUU-----UCC------------AACA-UGUGCGg -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 180008 | 0.67 | 1 |
Target: 5'- uGAuAC-CGGac-GGGUccUGUGCACGCCc -3' miRNA: 3'- -CUuUGaGCUguuUCCA--ACAUGUGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 51014 | 0.69 | 0.999998 |
Target: 5'- cAAGCUCGAgAAGGGc--UGCuCGCCa -3' miRNA: 3'- cUUUGAGCUgUUUCCaacAUGuGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 161670 | 0.69 | 0.999994 |
Target: 5'- aAGACUgGACAAaauGGGUUcaucggucgagucaaGUACACuGCCa -3' miRNA: 3'- cUUUGAgCUGUU---UCCAA---------------CAUGUG-CGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 260319 | 0.69 | 0.999994 |
Target: 5'- aGAACUCGcGCGGAGGUcggGUACcCGUUg -3' miRNA: 3'- cUUUGAGC-UGUUUCCAa--CAUGuGCGG- -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 340179 | 0.7 | 0.999988 |
Target: 5'- aGAAACUUGGCGAAGGUUcauUugGgGCa -3' miRNA: 3'- -CUUUGAGCUGUUUCCAAc--AugUgCGg -5' |
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32826 | 3' | -46.2 | NC_007346.1 | + | 365155 | 0.7 | 0.999983 |
Target: 5'- uAAGCUUGGCGGAGGUUG-GCugaGUCa -3' miRNA: 3'- cUUUGAGCUGUUUCCAACaUGug-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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