miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32826 5' -47.2 NC_007346.1 + 230740 1.05 0.070152
Target:  5'- uAUAACACCAACCAACUUACGCCAAGUu -3'
miRNA:   3'- -UAUUGUGGUUGGUUGAAUGCGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 255884 0.79 0.923115
Target:  5'- -cAACuGCCGGCCAGCUUuuCGCCAAGg -3'
miRNA:   3'- uaUUG-UGGUUGGUUGAAu-GCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 356560 0.75 0.982285
Target:  5'- cGUAACACCAAcacCCAACUUAUGUaAAGUa -3'
miRNA:   3'- -UAUUGUGGUU---GGUUGAAUGCGgUUCA- -5'
32826 5' -47.2 NC_007346.1 + 381472 0.75 0.982285
Target:  5'- -gAGCaaaACCAACCAAUUUGCGCUggGc -3'
miRNA:   3'- uaUUG---UGGUUGGUUGAAUGCGGuuCa -5'
32826 5' -47.2 NC_007346.1 + 10288 0.74 0.992673
Target:  5'- --cAUACCGGCUAcAUUUACGCCAAGa -3'
miRNA:   3'- uauUGUGGUUGGU-UGAAUGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 287432 0.73 0.997048
Target:  5'- uUAcCACCAACUGugUUACGcCCAAGa -3'
miRNA:   3'- uAUuGUGGUUGGUugAAUGC-GGUUCa -5'
32826 5' -47.2 NC_007346.1 + 162307 0.72 0.998238
Target:  5'- uGUGACAgCGGCCAACUUGcCGCagCAGGa -3'
miRNA:   3'- -UAUUGUgGUUGGUUGAAU-GCG--GUUCa -5'
32826 5' -47.2 NC_007346.1 + 66480 0.72 0.998531
Target:  5'- --uGCACCGGCag--UUGCGCCAAGUg -3'
miRNA:   3'- uauUGUGGUUGguugAAUGCGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 390634 0.7 0.999648
Target:  5'- ---cCACCGGCCGAUgacgacgAUGCCAAGa -3'
miRNA:   3'- uauuGUGGUUGGUUGaa-----UGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 302666 0.69 0.999864
Target:  5'- gGUAACuCUAACCGugGCaUAUGCCAAGg -3'
miRNA:   3'- -UAUUGuGGUUGGU--UGaAUGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 257939 0.69 0.999938
Target:  5'- cUGACACgGGCCGAggauCGCCGAGa -3'
miRNA:   3'- uAUUGUGgUUGGUUgaauGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 218710 0.69 0.999953
Target:  5'- --cGCACCGAUaaCGACc-ACGCCGAGUg -3'
miRNA:   3'- uauUGUGGUUG--GUUGaaUGCGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 364720 0.68 0.999965
Target:  5'- cAUGAC-UCAGCCAACcucCGCCAAGc -3'
miRNA:   3'- -UAUUGuGGUUGGUUGaauGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 78463 0.68 0.999981
Target:  5'- -aAugGCCAACUcaaAGCgccGCGCCGGGUu -3'
miRNA:   3'- uaUugUGGUUGG---UUGaa-UGCGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 77759 0.68 0.999981
Target:  5'- -gAGCACCua--GACUUACGCCAu-- -3'
miRNA:   3'- uaUUGUGGuuggUUGAAUGCGGUuca -5'
32826 5' -47.2 NC_007346.1 + 252811 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 256347 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 255426 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 254315 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 253582 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccGGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.