miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32826 5' -47.2 NC_007346.1 + 256347 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 257201 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccgcaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 257939 0.69 0.999938
Target:  5'- cUGACACgGGCCGAggauCGCCGAGa -3'
miRNA:   3'- uAUUGUGgUUGGUUgaauGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 259187 0.68 0.99999
Target:  5'- -cGACACCAugCugauuGCgUACGCCGAc- -3'
miRNA:   3'- uaUUGUGGUugGu----UGaAUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 263059 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccgcaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 265026 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 287432 0.73 0.997048
Target:  5'- uUAcCACCAACUGugUUACGcCCAAGa -3'
miRNA:   3'- uAUuGUGGUUGGUugAAUGC-GGUUCa -5'
32826 5' -47.2 NC_007346.1 + 300239 0.68 0.99999
Target:  5'- -aAGCACCGcCCAAa-UGCGCCAAu- -3'
miRNA:   3'- uaUUGUGGUuGGUUgaAUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 302666 0.69 0.999864
Target:  5'- gGUAACuCUAACCGugGCaUAUGCCAAGg -3'
miRNA:   3'- -UAUUGuGGUUGGU--UGaAUGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 353715 0.66 0.999998
Target:  5'- uAUGAUAUCAuauACCAuCUUAC-CCAAGUg -3'
miRNA:   3'- -UAUUGUGGU---UGGUuGAAUGcGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 356560 0.75 0.982285
Target:  5'- cGUAACACCAAcacCCAACUUAUGUaAAGUa -3'
miRNA:   3'- -UAUUGUGGUU---GGUUGAAUGCGgUUCA- -5'
32826 5' -47.2 NC_007346.1 + 364720 0.68 0.999965
Target:  5'- cAUGAC-UCAGCCAACcucCGCCAAGc -3'
miRNA:   3'- -UAUUGuGGUUGGUUGaauGCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 381472 0.75 0.982285
Target:  5'- -gAGCaaaACCAACCAAUUUGCGCUggGc -3'
miRNA:   3'- uaUUG---UGGUUGGUUGAAUGCGGuuCa -5'
32826 5' -47.2 NC_007346.1 + 390634 0.7 0.999648
Target:  5'- ---cCACCGGCCGAUgacgacgAUGCCAAGa -3'
miRNA:   3'- uauuGUGGUUGGUUGaa-----UGCGGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.