miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 256010 0.69 0.906527
Target:  5'- aGGAGGCGGuGCGCGau-GCGACGAa- -3'
miRNA:   3'- gCUUCCGCU-CGCGUaccCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 242893 0.72 0.807836
Target:  5'- aGAAGGCG-GUgGCAaaGGCGGCGAUGu -3'
miRNA:   3'- gCUUCCGCuCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 238467 1.09 0.006789
Target:  5'- gCGAAGGCGAGCGCAUGGGCGACGAUGg -3'
miRNA:   3'- -GCUUCCGCUCGCGUACCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 200828 0.7 0.90069
Target:  5'- uGGAGGCGgagaugguucaGGUGCAaauGGUGACGGUGg -3'
miRNA:   3'- gCUUCCGC-----------UCGCGUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198830 0.66 0.979066
Target:  5'- aGAuGGUG-GCGguUGagauggcGGCGGCGAUGg -3'
miRNA:   3'- gCUuCCGCuCGCguAC-------CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198778 0.67 0.966815
Target:  5'- gCGggGGUGAugGUG-GUGGG-GGCGAUGg -3'
miRNA:   3'- -GCuuCCGCU--CGCgUACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198673 0.7 0.875353
Target:  5'- gCGggGGUGAugGUgGCggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198628 0.68 0.953605
Target:  5'- gCGggGGUGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198495 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198378 0.7 0.881979
Target:  5'- uGGAGGCGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198288 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198120 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 197895 0.67 0.969651
Target:  5'- uGGAGGCGAuggugGCGau--GGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGCU-----CGCguacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 189557 0.71 0.823966
Target:  5'- aCGAucAGGCG-GUGa--GGGCGGCGGUGg -3'
miRNA:   3'- -GCU--UCCGCuCGCguaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 189392 0.66 0.983134
Target:  5'- aGGAGGCGAuggaggugGCG-GUGauGGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGCU--------CGCgUAC--CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188831 0.66 0.977116
Target:  5'- uGGAGGCGA-CGgugGaGGUGACGGUGg -3'
miRNA:   3'- gCUUCCGCUcGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188404 0.74 0.673239
Target:  5'- gCGGAGGCG-GCGauggcgGaGGCGGCGAUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgua---C-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188143 0.71 0.839491
Target:  5'- gCGAGGGUG-GCG-GUGGG-GACGGUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgUACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188118 0.75 0.616178
Target:  5'- aGGAGGUGAGgGCggcgGUGGG-GACGGUGg -3'
miRNA:   3'- gCUUCCGCUCgCG----UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188082 0.82 0.320831
Target:  5'- uGAGGGCG-GCgGCGUGGGCGGCGGc- -3'
miRNA:   3'- gCUUCCGCuCG-CGUACCCGCUGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.