miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 198628 0.68 0.953605
Target:  5'- gCGggGGUGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 59714 0.68 0.949817
Target:  5'- aGGAGGUG-GUGaugGcGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 314663 0.68 0.941637
Target:  5'- aGggGGUGgugguuguGGUGgAUGGuGUGACGGUGg -3'
miRNA:   3'- gCuuCCGC--------UCGCgUACC-CGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 61187 0.68 0.941637
Target:  5'- gCGAAGGCGgagguGGCGCcggugauggcgGUGGGCugGGCGGa- -3'
miRNA:   3'- -GCUUCCGC-----UCGCG-----------UACCCG--CUGCUac -5'
32827 3' -57 NC_007346.1 + 128548 0.68 0.937241
Target:  5'- uGAuGGCGA-UGCAgauGGCGGCGGUGg -3'
miRNA:   3'- gCUuCCGCUcGCGUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128720 0.68 0.937241
Target:  5'- cCGgcGGCGguGGCgGCGguGGCGGCGGUGg -3'
miRNA:   3'- -GCuuCCGC--UCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 308992 0.69 0.922814
Target:  5'- aCGGAGGCGcAGC-CGUGcGGCG-CGAg- -3'
miRNA:   3'- -GCUUCCGC-UCGcGUAC-CCGCuGCUac -5'
32827 3' -57 NC_007346.1 + 181921 0.69 0.922814
Target:  5'- gCGGAGGUGAugGCggGGGUGGCGggGg -3'
miRNA:   3'- -GCUUCCGCUcgCGuaCCCGCUGCuaC- -5'
32827 3' -57 NC_007346.1 + 181960 0.69 0.922814
Target:  5'- gCGGAGGUGAugGCggGGGUGGCGggGg -3'
miRNA:   3'- -GCUUCCGCUcgCGuaCCCGCUGCuaC- -5'
32827 3' -57 NC_007346.1 + 256010 0.69 0.906527
Target:  5'- aGGAGGCGGuGCGCGau-GCGACGAa- -3'
miRNA:   3'- gCUUCCGCU-CGCGUaccCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 310123 0.69 0.906527
Target:  5'- uGAAGGCaguGGCGgAgauGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGc--UCGCgUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128498 0.7 0.90069
Target:  5'- gCGAAGGUGAGauugauGGCGGCGGUGg -3'
miRNA:   3'- -GCUUCCGCUCgcguacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 311392 0.7 0.90069
Target:  5'- gCGAGGGUGAGCuugacgGCAgagaagGcGGCGGCGAc- -3'
miRNA:   3'- -GCUUCCGCUCG------CGUa-----C-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 200828 0.7 0.90069
Target:  5'- uGGAGGCGgagaugguucaGGUGCAaauGGUGACGGUGg -3'
miRNA:   3'- gCUUCCGC-----------UCGCGUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 307166 0.7 0.89465
Target:  5'- gCGgcGGCGAcGgGCugggGGGCGGCGGg- -3'
miRNA:   3'- -GCuuCCGCU-CgCGua--CCCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 165568 0.7 0.888413
Target:  5'- gCGAAGGUG-GCgGCGauGGCGAUGGUGg -3'
miRNA:   3'- -GCUUCCGCuCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 261155 0.7 0.888413
Target:  5'- cCGguGGCGAGUugGCGaguUGGGCGACGc-- -3'
miRNA:   3'- -GCuuCCGCUCG--CGU---ACCCGCUGCuac -5'
32827 3' -57 NC_007346.1 + 349800 0.7 0.888413
Target:  5'- aCGgcGGCGguGGCgGCGgcgGcGGCGGCGGUGg -3'
miRNA:   3'- -GCuuCCGC--UCG-CGUa--C-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310348 0.7 0.881979
Target:  5'- aGGAGGCGAGgGUggugGUGauGGCGGCGGa- -3'
miRNA:   3'- gCUUCCGCUCgCG----UAC--CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 198288 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.