miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 5' -54.7 NC_007346.1 + 309632 0.66 0.992952
Target:  5'- aUCucCGCCGCCAUCuccGC-CGcCAUCu -3'
miRNA:   3'- aAGuaGCGGCGGUAGu--CGaGCaGUAG- -5'
32827 5' -54.7 NC_007346.1 + 199275 0.66 0.991966
Target:  5'- ----cCGCCGCCAUCGccGC-CGcCAUCu -3'
miRNA:   3'- aaguaGCGGCGGUAGU--CGaGCaGUAG- -5'
32827 5' -54.7 NC_007346.1 + 349372 0.66 0.990873
Target:  5'- -cCGcCGCCGCCAccgCcGC-CGUCGUCg -3'
miRNA:   3'- aaGUaGCGGCGGUa--GuCGaGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 368334 0.67 0.986881
Target:  5'- aUCAaUGCCGCCGUauuuUAGCUCGcCgGUCu -3'
miRNA:   3'- aAGUaGCGGCGGUA----GUCGAGCaG-UAG- -5'
32827 5' -54.7 NC_007346.1 + 368091 0.67 0.986881
Target:  5'- aUCAaUGCCGCCGUauuuUAGCUCGcCgGUCu -3'
miRNA:   3'- aAGUaGCGGCGGUA----GUCGAGCaG-UAG- -5'
32827 5' -54.7 NC_007346.1 + 211954 0.67 0.985121
Target:  5'- cUCAUUuGCCGCUucuuccUCAGCaaggaggUCGUCAUCc -3'
miRNA:   3'- aAGUAG-CGGCGGu-----AGUCG-------AGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 166022 0.67 0.981665
Target:  5'- -cCAUCGCCGCCAccuUCGucGCcaccaUCGcCAUCg -3'
miRNA:   3'- aaGUAGCGGCGGU---AGU--CG-----AGCaGUAG- -5'
32827 5' -54.7 NC_007346.1 + 164903 0.67 0.97962
Target:  5'- aUCAUCGUCaUCGUCA--UCGUCAUCa -3'
miRNA:   3'- aAGUAGCGGcGGUAGUcgAGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 122118 0.67 0.97962
Target:  5'- aUCAUCuGCUGCCAUCAuGCgacgUGUCuugauUCg -3'
miRNA:   3'- aAGUAG-CGGCGGUAGU-CGa---GCAGu----AG- -5'
32827 5' -54.7 NC_007346.1 + 331812 0.67 0.97962
Target:  5'- -aCG-CGaCUGCCAUCAGUUaauacCGUCAUCg -3'
miRNA:   3'- aaGUaGC-GGCGGUAGUCGA-----GCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 384770 0.67 0.97962
Target:  5'- aUCAUCGUCGCCGaaauUCGuGCcUGUCAUa -3'
miRNA:   3'- aAGUAGCGGCGGU----AGU-CGaGCAGUAg -5'
32827 5' -54.7 NC_007346.1 + 391082 0.68 0.97741
Target:  5'- aUCAUC-CCGCUucuUCuuGGCaUCGUCGUCa -3'
miRNA:   3'- aAGUAGcGGCGGu--AG--UCG-AGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 310946 0.69 0.95306
Target:  5'- -cCGUCGCCGCCGccuucUCuGC-CGUCAa- -3'
miRNA:   3'- aaGUAGCGGCGGU-----AGuCGaGCAGUag -5'
32827 5' -54.7 NC_007346.1 + 367848 0.7 0.940549
Target:  5'- aUCAaCGCCGCCGUauuuUAGCUCGcCgGUCu -3'
miRNA:   3'- aAGUaGCGGCGGUA----GUCGAGCaG-UAG- -5'
32827 5' -54.7 NC_007346.1 + 274756 0.7 0.935942
Target:  5'- --uGUCuGCCGCCAcgcUCAGC-CGUCGUg -3'
miRNA:   3'- aagUAG-CGGCGGU---AGUCGaGCAGUAg -5'
32827 5' -54.7 NC_007346.1 + 128064 0.71 0.882556
Target:  5'- -cCAcCGCCGCCAUCAaucucaccuucgccGC-CGUCGUCu -3'
miRNA:   3'- aaGUaGCGGCGGUAGU--------------CGaGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 135230 0.72 0.870802
Target:  5'- cUUCuUCGCCGCCuuUCuGCUC-UCAUCa -3'
miRNA:   3'- -AAGuAGCGGCGGu-AGuCGAGcAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 128115 0.74 0.773195
Target:  5'- -cCAcCGCCGCCAUCuGCaUCGcCAUCa -3'
miRNA:   3'- aaGUaGCGGCGGUAGuCG-AGCaGUAG- -5'
32827 5' -54.7 NC_007346.1 + 126009 0.78 0.551144
Target:  5'- gUCGUCGUCGUCAUCA--UCGUCAUCa -3'
miRNA:   3'- aAGUAGCGGCGGUAGUcgAGCAGUAG- -5'
32827 5' -54.7 NC_007346.1 + 128247 0.79 0.494434
Target:  5'- -cCAUCGCCGCCGuUCGGCagGUCGUUa -3'
miRNA:   3'- aaGUAGCGGCGGU-AGUCGagCAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.