miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32829 3' -53.5 NC_007346.1 + 239045 1.11 0.01154
Target:  5'- aCCGAUGACGAGAUGCACGACACGCCAu -3'
miRNA:   3'- -GGCUACUGCUCUACGUGCUGUGCGGU- -5'
32829 3' -53.5 NC_007346.1 + 261156 0.78 0.711873
Target:  5'- aCCGGUGGCGAGuuggcgaguUGgGCGACGCGCg- -3'
miRNA:   3'- -GGCUACUGCUCu--------ACgUGCUGUGCGgu -5'
32829 3' -53.5 NC_007346.1 + 212106 0.73 0.914835
Target:  5'- -aGAUGuaagGCGAGAgUGCACGACGCuugguGCCAg -3'
miRNA:   3'- ggCUAC----UGCUCU-ACGUGCUGUG-----CGGU- -5'
32829 3' -53.5 NC_007346.1 + 148549 0.7 0.976473
Target:  5'- cCCGGUGAUGuGAUaagaUACGGCACGCa- -3'
miRNA:   3'- -GGCUACUGCuCUAc---GUGCUGUGCGgu -5'
32829 3' -53.5 NC_007346.1 + 264041 0.69 0.982699
Target:  5'- aCCGGUGACGAGuUGUggaguuuguuauGCGACugaGCGCa- -3'
miRNA:   3'- -GGCUACUGCUCuACG------------UGCUG---UGCGgu -5'
32829 3' -53.5 NC_007346.1 + 258877 0.69 0.982699
Target:  5'- aCUGGUGGCGAGuuguggaguUGguUGACGCGuCCGa -3'
miRNA:   3'- -GGCUACUGCUCu--------ACguGCUGUGC-GGU- -5'
32829 3' -53.5 NC_007346.1 + 390640 0.69 0.983954
Target:  5'- gCCGAUGACGAcGAUGCcaagaagaagcgggAUGAUuaaaGCCAc -3'
miRNA:   3'- -GGCUACUGCU-CUACG--------------UGCUGug--CGGU- -5'
32829 3' -53.5 NC_007346.1 + 203331 0.69 0.987594
Target:  5'- aCCGA-GACu-GAUGCccaGACAUGCCAa -3'
miRNA:   3'- -GGCUaCUGcuCUACGug-CUGUGCGGU- -5'
32829 3' -53.5 NC_007346.1 + 224298 0.69 0.988962
Target:  5'- uCUGAgaggGACGAGAUuCGCGA-ACGCCu -3'
miRNA:   3'- -GGCUa---CUGCUCUAcGUGCUgUGCGGu -5'
32829 3' -53.5 NC_007346.1 + 236905 0.68 0.990209
Target:  5'- cCCGGUGACaucugcGAUGCACagGGCAUugGCCAg -3'
miRNA:   3'- -GGCUACUGcu----CUACGUG--CUGUG--CGGU- -5'
32829 3' -53.5 NC_007346.1 + 257783 0.68 0.990209
Target:  5'- cCCGAuUGGCGcagugaucaaAGccGgGCGGCACGCCGg -3'
miRNA:   3'- -GGCU-ACUGC----------UCuaCgUGCUGUGCGGU- -5'
32829 3' -53.5 NC_007346.1 + 262561 0.68 0.991343
Target:  5'- uUGGaGACGAGAcccGUGCGACGCGCg- -3'
miRNA:   3'- gGCUaCUGCUCUa--CGUGCUGUGCGgu -5'
32829 3' -53.5 NC_007346.1 + 207854 0.68 0.994135
Target:  5'- aUGAcauUGAUGAaAUGCAgCGGCGCGCUAc -3'
miRNA:   3'- gGCU---ACUGCUcUACGU-GCUGUGCGGU- -5'
32829 3' -53.5 NC_007346.1 + 372534 0.67 0.995555
Target:  5'- uUGGUGuauuaaucuuACGAGAUGCACcuaGCGuCGCCAu -3'
miRNA:   3'- gGCUAC----------UGCUCUACGUGc--UGU-GCGGU- -5'
32829 3' -53.5 NC_007346.1 + 91369 0.67 0.996151
Target:  5'- uUCGAcaUGugGGGAaGU--GACACGCCAa -3'
miRNA:   3'- -GGCU--ACugCUCUaCGugCUGUGCGGU- -5'
32829 3' -53.5 NC_007346.1 + 256020 0.67 0.997148
Target:  5'- cCCGAgauUGAgGAGGcggUGCGCGAUGCGaCGa -3'
miRNA:   3'- -GGCU---ACUgCUCU---ACGUGCUGUGCgGU- -5'
32829 3' -53.5 NC_007346.1 + 249621 0.67 0.99756
Target:  5'- aCCGGUGGCGAGuuguggguUGguUGACGUGuCCAa -3'
miRNA:   3'- -GGCUACUGCUCu-------ACguGCUGUGC-GGU- -5'
32829 3' -53.5 NC_007346.1 + 256763 0.67 0.99756
Target:  5'- aCUGGUGGCGAGuUGCGgaguuggcUGAUGCGaCCGa -3'
miRNA:   3'- -GGCUACUGCUCuACGU--------GCUGUGC-GGU- -5'
32829 3' -53.5 NC_007346.1 + 53697 0.67 0.99756
Target:  5'- uCCGAUGAaaguauucGGGUGUACGAUacauGCGCUg -3'
miRNA:   3'- -GGCUACUgc------UCUACGUGCUG----UGCGGu -5'
32829 3' -53.5 NC_007346.1 + 274625 0.67 0.99756
Target:  5'- -aGAUGugGAguuucuGAUGCguuGCGAUGCGCUg -3'
miRNA:   3'- ggCUACugCU------CUACG---UGCUGUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.