miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32829 5' -57.3 NC_007346.1 + 273977 0.66 0.967781
Target:  5'- aCGCAcuGCgguaCG-GCACCUGGCUgggucGCCg -3'
miRNA:   3'- -GCGU--CGaaagGCuCGUGGACCGG-----UGG- -5'
32829 5' -57.3 NC_007346.1 + 323876 0.67 0.964816
Target:  5'- uGCGGCUguacCCGcgguuGUACCcGaGCCACCc -3'
miRNA:   3'- gCGUCGAaa--GGCu----CGUGGaC-CGGUGG- -5'
32829 5' -57.3 NC_007346.1 + 127472 0.67 0.951049
Target:  5'- aCGUAGCUUUgCGuGCACCUaGCacuacaagUACCg -3'
miRNA:   3'- -GCGUCGAAAgGCuCGUGGAcCG--------GUGG- -5'
32829 5' -57.3 NC_007346.1 + 220213 0.67 0.951049
Target:  5'- uCGCGGCaaUUCUcGGUACUcGGCCAUCa -3'
miRNA:   3'- -GCGUCGa-AAGGcUCGUGGaCCGGUGG- -5'
32829 5' -57.3 NC_007346.1 + 338303 0.68 0.93863
Target:  5'- uGCAGUaUUCCGuGCGCCaGGUaACUa -3'
miRNA:   3'- gCGUCGaAAGGCuCGUGGaCCGgUGG- -5'
32829 5' -57.3 NC_007346.1 + 90329 0.68 0.93863
Target:  5'- uGCAauGC-UUCCGcGGCAgCUGGCUugCu -3'
miRNA:   3'- gCGU--CGaAAGGC-UCGUgGACCGGugG- -5'
32829 5' -57.3 NC_007346.1 + 252200 0.68 0.93408
Target:  5'- uCGUAGCUgUCgCGGGUGCC-GGCUuugACCg -3'
miRNA:   3'- -GCGUCGAaAG-GCUCGUGGaCCGG---UGG- -5'
32829 5' -57.3 NC_007346.1 + 109358 0.68 0.93408
Target:  5'- uGUAGCUc-CCGuaguuGCACCUGcaCCACCa -3'
miRNA:   3'- gCGUCGAaaGGCu----CGUGGACc-GGUGG- -5'
32829 5' -57.3 NC_007346.1 + 265533 0.68 0.91705
Target:  5'- uGCGGCgccguuUUUCCGAGCACaccacauacaucGGCCAUg -3'
miRNA:   3'- gCGUCG------AAAGGCUCGUGga----------CCGGUGg -5'
32829 5' -57.3 NC_007346.1 + 56350 0.69 0.913796
Target:  5'- aCGguGCacUUgGAGCACUUGGUgCACCc -3'
miRNA:   3'- -GCguCGaaAGgCUCGUGGACCG-GUGG- -5'
32829 5' -57.3 NC_007346.1 + 392580 0.69 0.908206
Target:  5'- gGCGGCgUUCC----ACUUGGCCACCu -3'
miRNA:   3'- gCGUCGaAAGGcucgUGGACCGGUGG- -5'
32829 5' -57.3 NC_007346.1 + 239006 0.69 0.902411
Target:  5'- aCGCAGCUUcCCGAGUucAUCUcGGagcccaucgacaCCACCg -3'
miRNA:   3'- -GCGUCGAAaGGCUCG--UGGA-CC------------GGUGG- -5'
32829 5' -57.3 NC_007346.1 + 310728 0.71 0.841507
Target:  5'- uGCGGCUcUUUggCGAGCACgUGGCCGa- -3'
miRNA:   3'- gCGUCGA-AAG--GCUCGUGgACCGGUgg -5'
32829 5' -57.3 NC_007346.1 + 317500 0.71 0.826811
Target:  5'- uCGaCGGCgggagagggauagUCGuGCACUUGGCCACCa -3'
miRNA:   3'- -GC-GUCGaaa----------GGCuCGUGGACCGGUGG- -5'
32829 5' -57.3 NC_007346.1 + 239084 1.12 0.003806
Target:  5'- uCGCAGCUUUCCGAGCACCUGGCCACCg -3'
miRNA:   3'- -GCGUCGAAAGGCUCGUGGACCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.