miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32830 3' -51.2 NC_007346.1 + 262447 0.66 0.999798
Target:  5'- gAGAaUGUGGUGGAacuUGGUAaucUGCUGACa -3'
miRNA:   3'- -UCUaACGCCGUUUc--ACCAU---ACGGCUG- -5'
32830 3' -51.2 NC_007346.1 + 78207 0.66 0.999746
Target:  5'- --cUUGC-GCuAAGUGGUAagGCCGAUg -3'
miRNA:   3'- ucuAACGcCGuUUCACCAUa-CGGCUG- -5'
32830 3' -51.2 NC_007346.1 + 189932 0.66 0.999746
Target:  5'- uGAcgGCGGCGGugauGGUGGcgGUGaCGGCg -3'
miRNA:   3'- uCUaaCGCCGUU----UCACCa-UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 307295 0.66 0.999682
Target:  5'- gAGAUgGCGGCGGAGaUGGcgGUGgaGAUg -3'
miRNA:   3'- -UCUAaCGCCGUUUC-ACCa-UACggCUG- -5'
32830 3' -51.2 NC_007346.1 + 310067 0.66 0.999682
Target:  5'- gAGAUgGCGGCGGAGaUGGcg-GCgGAg -3'
miRNA:   3'- -UCUAaCGCCGUUUC-ACCauaCGgCUg -5'
32830 3' -51.2 NC_007346.1 + 165601 0.66 0.999605
Target:  5'- aAGGUgGCGGCGAuGGUGGUGg--CGAUg -3'
miRNA:   3'- -UCUAaCGCCGUU-UCACCAUacgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 189213 0.66 0.999596
Target:  5'- gAGGUgGCGGCGGugacGGUGGUuuaaugcAUGuCUGACc -3'
miRNA:   3'- -UCUAaCGCCGUU----UCACCA-------UAC-GGCUG- -5'
32830 3' -51.2 NC_007346.1 + 63499 0.66 0.999512
Target:  5'- aGGAUgGUGGCAAuGGUGGUGgagGUgGAg -3'
miRNA:   3'- -UCUAaCGCCGUU-UCACCAUa--CGgCUg -5'
32830 3' -51.2 NC_007346.1 + 197649 0.66 0.999512
Target:  5'- cGAUggcgGCGGCGAuGGUGGUGgugGagaUGGCg -3'
miRNA:   3'- uCUAa---CGCCGUU-UCACCAUa--Cg--GCUG- -5'
32830 3' -51.2 NC_007346.1 + 49989 0.66 0.999401
Target:  5'- uGGUgGUGGCGAuGGUGGUgGUGgCGAUg -3'
miRNA:   3'- uCUAaCGCCGUU-UCACCA-UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 310585 0.67 0.999268
Target:  5'- aAGGggGCGGCGGAGagGGUGagGCgGAg -3'
miRNA:   3'- -UCUaaCGCCGUUUCa-CCAUa-CGgCUg -5'
32830 3' -51.2 NC_007346.1 + 311678 0.67 0.999253
Target:  5'- cGGAUgugGCGGUGGAGaUGGUggcgguggaauugGUGgCGGCg -3'
miRNA:   3'- -UCUAa--CGCCGUUUC-ACCA-------------UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 188810 0.67 0.998925
Target:  5'- cGGUgGUGGCGAuGGUGGUgGUGgCGAUg -3'
miRNA:   3'- uCUAaCGCCGUU-UCACCA-UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 310007 0.67 0.998925
Target:  5'- gAGAUgGCGGUGGAGgcaaUGGUgGUGgCGGCa -3'
miRNA:   3'- -UCUAaCGCCGUUUC----ACCA-UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 60373 0.67 0.998925
Target:  5'- uGAUgGCGGUggGGUGGguggugGUGgaGACg -3'
miRNA:   3'- uCUAaCGCCGuuUCACCa-----UACggCUG- -5'
32830 3' -51.2 NC_007346.1 + 188068 0.67 0.998708
Target:  5'- uGGGcgGCGGCGGAGgaGGUgaggGUGgCGGCg -3'
miRNA:   3'- -UCUaaCGCCGUUUCa-CCA----UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 310109 0.67 0.998454
Target:  5'- gAGAUgGCGGC--GGUGGaguugGUGgCGGCg -3'
miRNA:   3'- -UCUAaCGCCGuuUCACCa----UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 154245 0.67 0.998454
Target:  5'- ---gUGUGGCGuccAGUGGgcagguacUGCCGGCg -3'
miRNA:   3'- ucuaACGCCGUu--UCACCau------ACGGCUG- -5'
32830 3' -51.2 NC_007346.1 + 306306 0.67 0.998454
Target:  5'- gAGAUgGCGGC--GGUGGaauugGUGgCGGCg -3'
miRNA:   3'- -UCUAaCGCCGuuUCACCa----UACgGCUG- -5'
32830 3' -51.2 NC_007346.1 + 198814 0.67 0.998454
Target:  5'- gAGAUggcgGUGGCGGAGaUGGUGgcgGuuGAg -3'
miRNA:   3'- -UCUAa---CGCCGUUUC-ACCAUa--CggCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.