miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32830 5' -55.6 NC_007346.1 + 134606 0.66 0.994153
Target:  5'- -aGCUGGAUguUUCAGauggaCGCGCcGCGGa -3'
miRNA:   3'- caCGGCCUA--AAGUUagg--GCGCG-CGCC- -5'
32830 5' -55.6 NC_007346.1 + 255812 0.66 0.994153
Target:  5'- uUGCCGac-UUUAAUCCCGCaaagGCGCa- -3'
miRNA:   3'- cACGGCcuaAAGUUAGGGCG----CGCGcc -5'
32830 5' -55.6 NC_007346.1 + 203786 0.66 0.993328
Target:  5'- -gGUCGcGAgUUCGAUCCuCGC-CGUGGg -3'
miRNA:   3'- caCGGC-CUaAAGUUAGG-GCGcGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 401045 0.66 0.992411
Target:  5'- uUGCCGGGcguaGAUCgCGUGCGaUGGa -3'
miRNA:   3'- cACGGCCUaaagUUAGgGCGCGC-GCC- -5'
32830 5' -55.6 NC_007346.1 + 248339 0.66 0.991398
Target:  5'- --aCCGGu-----GUCCCGUGUGCGGc -3'
miRNA:   3'- cacGGCCuaaaguUAGGGCGCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 280006 0.66 0.991398
Target:  5'- -cGCCgGGAUUgguggaugCGAcccUgCCGCGCGCGa -3'
miRNA:   3'- caCGG-CCUAAa-------GUU---AgGGCGCGCGCc -5'
32830 5' -55.6 NC_007346.1 + 265729 0.67 0.982893
Target:  5'- -gGCCaGGGacgCAG--CCGCGCGCGGa -3'
miRNA:   3'- caCGG-CCUaaaGUUagGGCGCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 255095 0.69 0.963254
Target:  5'- aGUGUCGcg---CAAUCUCGCGCGCa- -3'
miRNA:   3'- -CACGGCcuaaaGUUAGGGCGCGCGcc -5'
32830 5' -55.6 NC_007346.1 + 263073 0.69 0.952907
Target:  5'- gGUGaUCGGcAUUUCGAUgCUCGCGCGUGc -3'
miRNA:   3'- -CAC-GGCC-UAAAGUUA-GGGCGCGCGCc -5'
32830 5' -55.6 NC_007346.1 + 242917 0.71 0.905157
Target:  5'- aGUGCCGug---CAAUCUCaCGCGCGGa -3'
miRNA:   3'- -CACGGCcuaaaGUUAGGGcGCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 274111 0.72 0.866685
Target:  5'- cGUGCuCGGAUUUC-GUCaagaCGcCGUGCGGa -3'
miRNA:   3'- -CACG-GCCUAAAGuUAGg---GC-GCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 251562 0.74 0.788465
Target:  5'- uUGUCGGugUUCAAUCUCG-GCGCGGu -3'
miRNA:   3'- cACGGCCuaAAGUUAGGGCgCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 253984 0.77 0.612269
Target:  5'- aGUGUCGcg---CAAUCUCGCGCGCGGa -3'
miRNA:   3'- -CACGGCcuaaaGUUAGGGCGCGCGCC- -5'
32830 5' -55.6 NC_007346.1 + 239329 1.1 0.008067
Target:  5'- cGUGCCGGAUUUCAAUCCCGCGCGCGGu -3'
miRNA:   3'- -CACGGCCUAAAGUUAGGGCGCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.