Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32830 | 5' | -55.6 | NC_007346.1 | + | 401045 | 0.66 | 0.992411 |
Target: 5'- uUGCCGGGcguaGAUCgCGUGCGaUGGa -3' miRNA: 3'- cACGGCCUaaagUUAGgGCGCGC-GCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 248339 | 0.66 | 0.991398 |
Target: 5'- --aCCGGu-----GUCCCGUGUGCGGc -3' miRNA: 3'- cacGGCCuaaaguUAGGGCGCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 280006 | 0.66 | 0.991398 |
Target: 5'- -cGCCgGGAUUgguggaugCGAcccUgCCGCGCGCGa -3' miRNA: 3'- caCGG-CCUAAa-------GUU---AgGGCGCGCGCc -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 263073 | 0.69 | 0.952907 |
Target: 5'- gGUGaUCGGcAUUUCGAUgCUCGCGCGUGc -3' miRNA: 3'- -CAC-GGCC-UAAAGUUA-GGGCGCGCGCc -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 251562 | 0.74 | 0.788465 |
Target: 5'- uUGUCGGugUUCAAUCUCG-GCGCGGu -3' miRNA: 3'- cACGGCCuaAAGUUAGGGCgCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 239329 | 1.1 | 0.008067 |
Target: 5'- cGUGCCGGAUUUCAAUCCCGCGCGCGGu -3' miRNA: 3'- -CACGGCCUAAAGUUAGGGCGCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 253984 | 0.77 | 0.612269 |
Target: 5'- aGUGUCGcg---CAAUCUCGCGCGCGGa -3' miRNA: 3'- -CACGGCcuaaaGUUAGGGCGCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 274111 | 0.72 | 0.866685 |
Target: 5'- cGUGCuCGGAUUUC-GUCaagaCGcCGUGCGGa -3' miRNA: 3'- -CACG-GCCUAAAGuUAGg---GC-GCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 242917 | 0.71 | 0.905157 |
Target: 5'- aGUGCCGug---CAAUCUCaCGCGCGGa -3' miRNA: 3'- -CACGGCcuaaaGUUAGGGcGCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 255095 | 0.69 | 0.963254 |
Target: 5'- aGUGUCGcg---CAAUCUCGCGCGCa- -3' miRNA: 3'- -CACGGCcuaaaGUUAGGGCGCGCGcc -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 265729 | 0.67 | 0.982893 |
Target: 5'- -gGCCaGGGacgCAG--CCGCGCGCGGa -3' miRNA: 3'- caCGG-CCUaaaGUUagGGCGCGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 203786 | 0.66 | 0.993328 |
Target: 5'- -gGUCGcGAgUUCGAUCCuCGC-CGUGGg -3' miRNA: 3'- caCGGC-CUaAAGUUAGG-GCGcGCGCC- -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 255812 | 0.66 | 0.994153 |
Target: 5'- uUGCCGac-UUUAAUCCCGCaaagGCGCa- -3' miRNA: 3'- cACGGCcuaAAGUUAGGGCG----CGCGcc -5' |
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32830 | 5' | -55.6 | NC_007346.1 | + | 134606 | 0.66 | 0.994153 |
Target: 5'- -aGCUGGAUguUUCAGauggaCGCGCcGCGGa -3' miRNA: 3'- caCGGCCUA--AAGUUagg--GCGCG-CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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