miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 3' -46.9 NC_007346.1 + 71969 0.68 0.999997
Target:  5'- gCUGuAGCGUCGUCGGUcgUCGuUCUUu -3'
miRNA:   3'- -GAUuUUGCGGCAGCCAcaAGUuAGAG- -5'
32831 3' -46.9 NC_007346.1 + 87019 0.68 0.999996
Target:  5'- -aGGGACGCC-UCGGUGUacgCAccCUCa -3'
miRNA:   3'- gaUUUUGCGGcAGCCACAa--GUuaGAG- -5'
32831 3' -46.9 NC_007346.1 + 102729 0.66 1
Target:  5'- -cAAAACGUuuaCGUCGGcaacuaUUCAAUCUCc -3'
miRNA:   3'- gaUUUUGCG---GCAGCCac----AAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 161266 0.66 1
Target:  5'- aCUGGAACGUCca-GGUGaUCAGUCa- -3'
miRNA:   3'- -GAUUUUGCGGcagCCACaAGUUAGag -5'
32831 3' -46.9 NC_007346.1 + 224431 0.66 1
Target:  5'- -aAAAACGcCCGUCGauUGUUCAAUaUCa -3'
miRNA:   3'- gaUUUUGC-GGCAGCc-ACAAGUUAgAG- -5'
32831 3' -46.9 NC_007346.1 + 242920 0.91 0.479928
Target:  5'- aUAAAACGCCGUCGGgGaUCAAUCUCg -3'
miRNA:   3'- gAUUUUGCGGCAGCCaCaAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 244995 0.68 0.999992
Target:  5'- uUAGAACGgC-UUGGUGUgaucaccgguaUCAAUCUCa -3'
miRNA:   3'- gAUUUUGCgGcAGCCACA-----------AGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 246027 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 251546 0.82 0.870565
Target:  5'- uCUAAuuacauCGCaauuGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUuu----GCGg---CAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 252485 0.96 0.271866
Target:  5'- aUAAAACGCC-UCGGUGUUCAAUCUCg -3'
miRNA:   3'- gAUUUUGCGGcAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 253254 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 253987 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 254459 0.66 1
Target:  5'- aCUGAGcCGCCGUUGGUugGUUUu-UUUCa -3'
miRNA:   3'- -GAUUUuGCGGCAGCCA--CAAGuuAGAG- -5'
32831 3' -46.9 NC_007346.1 + 254841 0.78 0.965708
Target:  5'- --cAGACGUCGUCGGcaUUCGAUCUCg -3'
miRNA:   3'- gauUUUGCGGCAGCCacAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 255098 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 256054 0.98 0.224298
Target:  5'- cCUAAAACGCCGUUGGcGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCaCAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 256928 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 257666 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 258273 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 259043 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.