Results 21 - 31 of 31 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 32831 | 3' | -46.9 | NC_007346.1 | + | 260640 | 0.74 | 0.996166 |
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Target: 5'- cCUAAAACGCCGUCGGUaUUCc----- -3' miRNA: 3'- -GAUUUUGCGGCAGCCAcAAGuuagag -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 254841 | 0.78 | 0.965708 |
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Target: 5'- --cAGACGUCGUCGGcaUUCGAUCUCg -3' miRNA: 3'- gauUUUGCGGCAGCCacAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 251546 | 0.82 | 0.870565 |
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Target: 5'- uCUAAuuacauCGCaauuGUCGGUGUUCAAUCUCg -3' miRNA: 3'- -GAUUuu----GCGg---CAGCCACAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 263628 | 0.89 | 0.528255 |
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Target: 5'- cCUAAAACGCCGUCGGguUUUAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCacAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 242920 | 0.91 | 0.479928 |
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Target: 5'- aUAAAACGCCGUCGGgGaUCAAUCUCg -3' miRNA: 3'- gAUUUUGCGGCAGCCaCaAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 252485 | 0.96 | 0.271866 |
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Target: 5'- aUAAAACGCC-UCGGUGUUCAAUCUCg -3' miRNA: 3'- gAUUUUGCGGcAGCCACAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 256054 | 0.98 | 0.224298 |
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Target: 5'- cCUAAAACGCCGUUGGcGUUCAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCaCAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 253987 | 1.12 | 0.037606 |
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Target: 5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 253254 | 1.12 | 0.037606 |
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Target: 5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 246027 | 1.12 | 0.037606 |
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Target: 5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5' |
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| 32831 | 3' | -46.9 | NC_007346.1 | + | 255098 | 1.12 | 0.037606 |
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Target: 5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3' miRNA: 3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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