miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32832 3' -54.7 NC_007346.1 + 207267 0.65 0.995586
Target:  5'- gACAggGCAAUUgcccgccGGGAUGCCGGUaucgGCg -3'
miRNA:   3'- aUGUagCGUUAA-------CCCUGUGGCCGg---CG- -5'
32832 3' -54.7 NC_007346.1 + 67428 0.66 0.99424
Target:  5'- cUACAUCGCA--UGGGGuucaauggcCACCGuGuuGUu -3'
miRNA:   3'- -AUGUAGCGUuaACCCU---------GUGGC-CggCG- -5'
32832 3' -54.7 NC_007346.1 + 190395 0.66 0.993408
Target:  5'- gGCAU-GC---UGuGACACCGGCUGCu -3'
miRNA:   3'- aUGUAgCGuuaACcCUGUGGCCGGCG- -5'
32832 3' -54.7 NC_007346.1 + 207262 0.66 0.993231
Target:  5'- --aAUUGCAAaagauggaccaGGGGCACCGGgUGCa -3'
miRNA:   3'- augUAGCGUUaa---------CCCUGUGGCCgGCG- -5'
32832 3' -54.7 NC_007346.1 + 50017 0.66 0.991458
Target:  5'- gGCGagGCGGauugUGGcGACGCUGGUgGCg -3'
miRNA:   3'- aUGUagCGUUa---ACC-CUGUGGCCGgCG- -5'
32832 3' -54.7 NC_007346.1 + 253113 0.67 0.990792
Target:  5'- uUGgAUCGCAAUcGGGGaggccauuuagggaACCGGUgGCg -3'
miRNA:   3'- -AUgUAGCGUUAaCCCUg-------------UGGCCGgCG- -5'
32832 3' -54.7 NC_007346.1 + 236899 0.67 0.990326
Target:  5'- gACAUCuGCGAUgcacaGGGCAUUGGCCa- -3'
miRNA:   3'- aUGUAG-CGUUAac---CCUGUGGCCGGcg -5'
32832 3' -54.7 NC_007346.1 + 311703 0.67 0.989079
Target:  5'- aAgGUgGCAGUgGGGAUugUGGUgGCg -3'
miRNA:   3'- aUgUAgCGUUAaCCCUGugGCCGgCG- -5'
32832 3' -54.7 NC_007346.1 + 145925 0.67 0.98771
Target:  5'- --aAUUGCg---GGGuAUACCGGUCGCg -3'
miRNA:   3'- augUAGCGuuaaCCC-UGUGGCCGGCG- -5'
32832 3' -54.7 NC_007346.1 + 219065 0.67 0.984578
Target:  5'- -uUAUCGCAugUGGGuacaugUACCGGCCa- -3'
miRNA:   3'- auGUAGCGUuaACCCu-----GUGGCCGGcg -5'
32832 3' -54.7 NC_007346.1 + 110553 0.67 0.984578
Target:  5'- gUGCAUCGCuccUUGcuGCACgaaaGGCCGCg -3'
miRNA:   3'- -AUGUAGCGuu-AACccUGUGg---CCGGCG- -5'
32832 3' -54.7 NC_007346.1 + 382060 0.67 0.984578
Target:  5'- uUGCGUCGCGAUacUGuGGAgAUUGG-CGCa -3'
miRNA:   3'- -AUGUAGCGUUA--AC-CCUgUGGCCgGCG- -5'
32832 3' -54.7 NC_007346.1 + 56728 0.68 0.97879
Target:  5'- gUGCAggugguaGCAAUggcgGGGAUGCUGGCgGUg -3'
miRNA:   3'- -AUGUag-----CGUUAa---CCCUGUGGCCGgCG- -5'
32832 3' -54.7 NC_007346.1 + 147795 0.69 0.968755
Target:  5'- aUGCAUUGCAGUUGccACGCgCGGCaCGUu -3'
miRNA:   3'- -AUGUAGCGUUAACccUGUG-GCCG-GCG- -5'
32832 3' -54.7 NC_007346.1 + 263664 0.69 0.968755
Target:  5'- aACGUCGCg---GGGuacauGCGCaCGGUCGCu -3'
miRNA:   3'- aUGUAGCGuuaaCCC-----UGUG-GCCGGCG- -5'
32832 3' -54.7 NC_007346.1 + 87208 0.7 0.948003
Target:  5'- ---uUCGCGAUggaggagcuuaUGGGccGCGCgGGCCGCc -3'
miRNA:   3'- auguAGCGUUA-----------ACCC--UGUGgCCGGCG- -5'
32832 3' -54.7 NC_007346.1 + 92816 0.7 0.943825
Target:  5'- cGC-UCGUGA-UGGGGCACCGGCa-- -3'
miRNA:   3'- aUGuAGCGUUaACCCUGUGGCCGgcg -5'
32832 3' -54.7 NC_007346.1 + 255471 0.72 0.890216
Target:  5'- -----gGCAGUUGGGAUACCcuGCCGUa -3'
miRNA:   3'- auguagCGUUAACCCUGUGGc-CGGCG- -5'
32832 3' -54.7 NC_007346.1 + 309965 0.72 0.870032
Target:  5'- gAgAUgGCGGUgGGGGCACCGGUgGUg -3'
miRNA:   3'- aUgUAgCGUUAaCCCUGUGGCCGgCG- -5'
32832 3' -54.7 NC_007346.1 + 392769 0.75 0.764496
Target:  5'- aGCAgcgCGCcccaUGGGACGCaaaGGCCGCc -3'
miRNA:   3'- aUGUa--GCGuua-ACCCUGUGg--CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.