miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
32833	3'	-50.5	NC_007346.1	+	27123	0.66	0.999896
	Target:  5'- aUGCaAAucUGGACGCCuugcaauuuuuGCGCGCGUUGu -3' miRNA:   3'- cGCGaUU--ACCUGUGG-----------CGCGUGUAAUu -5'
32833	3'	-50.5	NC_007346.1	+	318197	0.67	0.999579
	Target:  5'- gGUGCagUAAUGGAUGCUGCacaGCGCGUg-- -3' miRNA:   3'- -CGCG--AUUACCUGUGGCG---CGUGUAauu -5'
32833	3'	-50.5	NC_007346.1	+	238407	0.67	0.99948
	Target:  5'- aGCGCUugccaccgaggAGUacauuaacGGGCGCCGCGCA-GUUAAg -3' miRNA:   3'- -CGCGA-----------UUA--------CCUGUGGCGCGUgUAAUU- -5'
32833	3'	-50.5	NC_007346.1	+	87764	0.68	0.998044
	Target:  5'- gGgGUcuAUGGACGCCGCGCuuACAc--- -3' miRNA:   3'- -CgCGauUACCUGUGGCGCG--UGUaauu -5'
32833	3'	-50.5	NC_007346.1	+	86460	0.69	0.996253
	Target:  5'- uGCGCUAAcccuccaGGAUgacuuugguGCCGCGCACGa--- -3' miRNA:   3'- -CGCGAUUa------CCUG---------UGGCGCGUGUaauu -5'
32833	3'	-50.5	NC_007346.1	+	134606	0.69	0.996253
	Target:  5'- -aGCUggauguuucaGAUGGACgcGCCGCGgACAUUGu -3' miRNA:   3'- cgCGA----------UUACCUG--UGGCGCgUGUAAUu -5'
32833	3'	-50.5	NC_007346.1	+	252273	0.7	0.994166
	Target:  5'- uGCGCUGAUaaaucgcgaGGAgACCGCGCGa----- -3' miRNA:   3'- -CGCGAUUA---------CCUgUGGCGCGUguaauu -5'
32833	3'	-50.5	NC_007346.1	+	315224	0.7	0.993292
	Target:  5'- gGCGCUGAuuauauUGGAguaCGCCGCGaaACGUUAAa -3' miRNA:   3'- -CGCGAUU------ACCU---GUGGCGCg-UGUAAUU- -5'
32833	3'	-50.5	NC_007346.1	+	110105	0.71	0.985633
	Target:  5'- gGCuGCUGAUGGugAugUCGCGUACGUa-- -3' miRNA:   3'- -CG-CGAUUACCugU--GGCGCGUGUAauu -5'
32833	3'	-50.5	NC_007346.1	+	260299	1.09	0.020729
	Target:  5'- cGCGCUAAUGGACACCGCGCACAUUAAg -3' miRNA:   3'- -CGCGAUUACCUGUGGCGCGUGUAAUU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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