miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32833 5' -51.2 NC_007346.1 + 23620 0.68 0.997489
Target:  5'- aACUAAUGA--UGGUGGUUuaAUUGGCGg -3'
miRNA:   3'- aUGAUUAUUgcGCCACCGG--UAACCGC- -5'
32833 5' -51.2 NC_007346.1 + 49784 0.68 0.996548
Target:  5'- -----uUAACGCGGUGGCU---GGCa -3'
miRNA:   3'- augauuAUUGCGCCACCGGuaaCCGc -5'
32833 5' -51.2 NC_007346.1 + 49983 0.68 0.997489
Target:  5'- cACU--UGugGUGGUGGCgAUggUGGUGg -3'
miRNA:   3'- aUGAuuAUugCGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 56745 0.69 0.994608
Target:  5'- gGCgggGAUGcugGCGGUGGCgGUgaUGGCGg -3'
miRNA:   3'- aUGa--UUAUug-CGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 57455 0.68 0.998206
Target:  5'- gGC-AAUAACgGCGGUGGCgGagaUGGUGg -3'
miRNA:   3'- aUGaUUAUUG-CGCCACCGgUa--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 59292 0.66 0.999804
Target:  5'- gGCggugGugGCGGUGGUaaaGgcGGCGg -3'
miRNA:   3'- aUGauuaUugCGCCACCGg--UaaCCGC- -5'
32833 5' -51.2 NC_007346.1 + 59719 0.69 0.992883
Target:  5'- gUGgUGAUGGCggcgGCGGUGGUgAUggUGGCGg -3'
miRNA:   3'- -AUgAUUAUUG----CGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 60348 0.69 0.994608
Target:  5'- gUGgUGAUggugGugGCGGUGGUgGUgaUGGCGg -3'
miRNA:   3'- -AUgAUUA----UugCGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 61203 0.66 0.999617
Target:  5'- cGCcGGUGAUgGCGGUGGgCug-GGCGg -3'
miRNA:   3'- aUGaUUAUUG-CGCCACCgGuaaCCGC- -5'
32833 5' -51.2 NC_007346.1 + 128196 0.71 0.98317
Target:  5'- gGC-GGUGACgGCGGUGGCgGUgaUGGUGg -3'
miRNA:   3'- aUGaUUAUUG-CGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128262 0.69 0.995979
Target:  5'- gGCggugAugGUGGUGGCgGUgauggUGGCGg -3'
miRNA:   3'- aUGauuaUugCGCCACCGgUA-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128289 0.67 0.998742
Target:  5'- gGCg---AugGCGGUGGUgGUgaUGGUGg -3'
miRNA:   3'- aUGauuaUugCGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128346 0.71 0.98317
Target:  5'- gGCggaGAUGGCgGUGGUGGCgAUggUGGCGa -3'
miRNA:   3'- aUGa--UUAUUG-CGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128488 0.66 0.999617
Target:  5'- gAUUGAUGGCgGCGGUGGaga-UGGUGa -3'
miRNA:   3'- aUGAUUAUUG-CGCCACCgguaACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128540 0.7 0.991868
Target:  5'- aUGCaGAUGGCgGCGGUGGa-GUUGGUGa -3'
miRNA:   3'- -AUGaUUAUUG-CGCCACCggUAACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128568 0.74 0.917767
Target:  5'- gGCggagAugGCGGUGGCgGUgaUGGCGa -3'
miRNA:   3'- aUGauuaUugCGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128718 0.68 0.996548
Target:  5'- gGCggcGGUGGCgGCGGUGGCgGcggUGGUGg -3'
miRNA:   3'- aUGa--UUAUUG-CGCCACCGgUa--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 165576 0.67 0.999289
Target:  5'- gGCggcGAUGGCGaUGGUGGCgAcgaaggUGGCGg -3'
miRNA:   3'- aUGa--UUAUUGC-GCCACCGgUa-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 167850 0.68 0.998206
Target:  5'- cGCUGGUAu--UGGUGGCCuaAUUGGUGu -3'
miRNA:   3'- aUGAUUAUugcGCCACCGG--UAACCGC- -5'
32833 5' -51.2 NC_007346.1 + 180776 0.67 0.999289
Target:  5'- aACUug-GugGCGGUGGUgAU-GGUGa -3'
miRNA:   3'- aUGAuuaUugCGCCACCGgUAaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.