miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32834 5' -53.4 NC_007346.1 + 307916 0.66 0.998435
Target:  5'- gGCGgUGGggGCACCG----GCGGUGg -3'
miRNA:   3'- gUGCgACCuaCGUGGCuuugUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 308716 0.66 0.998435
Target:  5'- gGCGgUGGggGCACCG----GCGGUGg -3'
miRNA:   3'- gUGCgACCuaCGUGGCuuugUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 167820 0.66 0.998435
Target:  5'- --aGUUGGAUGUAUgGGGACACguuuauacauAGCGu -3'
miRNA:   3'- gugCGACCUACGUGgCUUUGUG----------UCGC- -5'
32834 5' -53.4 NC_007346.1 + 314197 0.66 0.998145
Target:  5'- -----cGGAUcGCACCGAaucgGACGCAGCc -3'
miRNA:   3'- gugcgaCCUA-CGUGGCU----UUGUGUCGc -5'
32834 5' -53.4 NC_007346.1 + 239567 0.66 0.998145
Target:  5'- aAC-UUGGAUGCaACCGcgGCGgCGGCGg -3'
miRNA:   3'- gUGcGACCUACG-UGGCuuUGU-GUCGC- -5'
32834 5' -53.4 NC_007346.1 + 61126 0.66 0.997811
Target:  5'- gGCGgaGGAgguggugaugGCGCCGGugAugGCGGUGg -3'
miRNA:   3'- gUGCgaCCUa---------CGUGGCU--UugUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 52799 0.66 0.997811
Target:  5'- gCAUGUgcacacGGGUGCAUgGuauGCACAGCa -3'
miRNA:   3'- -GUGCGa-----CCUACGUGgCuu-UGUGUCGc -5'
32834 5' -53.4 NC_007346.1 + 104657 0.66 0.997587
Target:  5'- aACGUUGGAUGUAUCGuacAAAUccuuccuccggugguGCGGCGu -3'
miRNA:   3'- gUGCGACCUACGUGGC---UUUG---------------UGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 171914 0.66 0.996991
Target:  5'- gUACGuCUGG-UGCGucugguucuCCGAA-CACGGCGg -3'
miRNA:   3'- -GUGC-GACCuACGU---------GGCUUuGUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 272450 0.67 0.996493
Target:  5'- gACGCcguguuuuccaUGGAUGCGCUGAcgguGCGCAuCGa -3'
miRNA:   3'- gUGCG-----------ACCUACGUGGCUu---UGUGUcGC- -5'
32834 5' -53.4 NC_007346.1 + 183347 0.67 0.996493
Target:  5'- cCACGCUcGAUGaCACUGcAGACAacgaAGCGu -3'
miRNA:   3'- -GUGCGAcCUAC-GUGGC-UUUGUg---UCGC- -5'
32834 5' -53.4 NC_007346.1 + 239777 0.67 0.996493
Target:  5'- aUAUGCUuGAUGCugUGGAuuGCGCGGUa -3'
miRNA:   3'- -GUGCGAcCUACGugGCUU--UGUGUCGc -5'
32834 5' -53.4 NC_007346.1 + 98476 0.67 0.995296
Target:  5'- -uCGCUGGuguaguuuuUGCACUGGA--GCGGCGa -3'
miRNA:   3'- guGCGACCu--------ACGUGGCUUugUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 307383 0.67 0.994583
Target:  5'- gGCGgUGGAgaugGCGgCGGAGCagGCGGUGg -3'
miRNA:   3'- gUGCgACCUa---CGUgGCUUUG--UGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 40418 0.68 0.991908
Target:  5'- aUACGCccGGuUGCGCCGAcaaugagaAGCAUGGCa -3'
miRNA:   3'- -GUGCGa-CCuACGUGGCU--------UUGUGUCGc -5'
32834 5' -53.4 NC_007346.1 + 212173 0.68 0.991908
Target:  5'- aGCGC-GGuuuAUGCagaauACCGAuacAACACAGCGg -3'
miRNA:   3'- gUGCGaCC---UACG-----UGGCU---UUGUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 227978 0.68 0.990814
Target:  5'- gGCGUUGGuauuUGCGaaaaaCG-AGCACGGCGa -3'
miRNA:   3'- gUGCGACCu---ACGUg----GCuUUGUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 274460 0.68 0.989606
Target:  5'- gAUGCUGcacuucgcGA-GCACCGcgaAAACACGGCGg -3'
miRNA:   3'- gUGCGAC--------CUaCGUGGC---UUUGUGUCGC- -5'
32834 5' -53.4 NC_007346.1 + 255274 0.68 0.989606
Target:  5'- aGCGUcgaaUGcGA-GCACCGAGACGCuGCa -3'
miRNA:   3'- gUGCG----AC-CUaCGUGGCUUUGUGuCGc -5'
32834 5' -53.4 NC_007346.1 + 188157 0.68 0.989606
Target:  5'- aCAUGgUGGcgGCugCGAggGugGCGGUGg -3'
miRNA:   3'- -GUGCgACCuaCGugGCU--UugUGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.