miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32835 5' -56 NC_007346.1 + 309419 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 309602 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 306854 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 308362 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307232 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 309443 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 306983 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 308409 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 308038 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 308062 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 308385 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307765 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307789 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307561 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307585 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 189050 0.66 0.981517
Target:  5'- cGUCACCACCaCCACCguuACCAc-- -3'
miRNA:   3'- aCGGUGGUGGaGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 307256 0.66 0.981517
Target:  5'- -aCCGCCAUCUCCACC---GCCAu-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 180311 0.66 0.979488
Target:  5'- -uCCAUCACCUCCACCgucACCAc-- -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuUGGUuua -5'
32835 5' -56 NC_007346.1 + 180509 0.66 0.979488
Target:  5'- -uCCAUCGCCUCCACCaucgcccCCAAAUu -3'
miRNA:   3'- acGGUGGUGGAGGUGGgcuu---GGUUUA- -5'
32835 5' -56 NC_007346.1 + 199097 0.66 0.979488
Target:  5'- cGCCACCAUCaCC-CCCGccACCAu-- -3'
miRNA:   3'- aCGGUGGUGGaGGuGGGCu-UGGUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.