miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32836 3' -50.5 NC_007346.1 + 338115 0.66 0.999943
Target:  5'- -aUAUACCUGAUACCauuUUCCC-AUAUa -3'
miRNA:   3'- caGUAUGGGCUAUGGc--AAGGGcUAUG- -5'
32836 3' -50.5 NC_007346.1 + 351970 0.66 0.999905
Target:  5'- cGUCAaaugcAUCCGGUGCCGUgCUCGAa-- -3'
miRNA:   3'- -CAGUa----UGGGCUAUGGCAaGGGCUaug -5'
32836 3' -50.5 NC_007346.1 + 257398 0.66 0.999905
Target:  5'- cUCGUGgCgGAUugCGUUCuuGGUAa -3'
miRNA:   3'- cAGUAUgGgCUAugGCAAGggCUAUg -5'
32836 3' -50.5 NC_007346.1 + 207715 0.67 0.999754
Target:  5'- --aGUACcgCCGAUACCGgcaUCCCGGcggGCa -3'
miRNA:   3'- cagUAUG--GGCUAUGGCa--AGGGCUa--UG- -5'
32836 3' -50.5 NC_007346.1 + 174651 0.67 0.999692
Target:  5'- ---uUAUCCGAUAUuugCGUUCCCG-UGCg -3'
miRNA:   3'- caguAUGGGCUAUG---GCAAGGGCuAUG- -5'
32836 3' -50.5 NC_007346.1 + 298613 0.67 0.999618
Target:  5'- --aAUACaCUGGUAuCCGUUCuuGAUGCc -3'
miRNA:   3'- cagUAUG-GGCUAU-GGCAAGggCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 191244 0.68 0.999529
Target:  5'- aUCA-AUUCGuUGCCGUUCCgGGUACu -3'
miRNA:   3'- cAGUaUGGGCuAUGGCAAGGgCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 180023 0.68 0.999423
Target:  5'- uGUCGUACCagaccauGAUACCGgacgggUCCUG-UGCa -3'
miRNA:   3'- -CAGUAUGGg------CUAUGGCa-----AGGGCuAUG- -5'
32836 3' -50.5 NC_007346.1 + 59496 0.68 0.999145
Target:  5'- -gCAU-CCCGAgagcCCGUUauaCCGAUACg -3'
miRNA:   3'- caGUAuGGGCUau--GGCAAg--GGCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 274776 0.69 0.998518
Target:  5'- cGUCGUGCCCGucgccaaCGUUCCCa---- -3'
miRNA:   3'- -CAGUAUGGGCuaug---GCAAGGGcuaug -5'
32836 3' -50.5 NC_007346.1 + 160659 0.71 0.989785
Target:  5'- aUCgAUAUCCGAUACCGgcggcgcUgCCGGUACa -3'
miRNA:   3'- cAG-UAUGGGCUAUGGCa------AgGGCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 278483 0.73 0.977486
Target:  5'- cUCAUGCCCGGUGUCGUaUCUGAUAUu -3'
miRNA:   3'- cAGUAUGGGCUAUGGCAaGGGCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 316083 0.93 0.20888
Target:  5'- -cCGUACCCGAUACCGUaCCCGAUACc -3'
miRNA:   3'- caGUAUGGGCUAUGGCAaGGGCUAUG- -5'
32836 3' -50.5 NC_007346.1 + 316045 1.09 0.025207
Target:  5'- aGUCAUACCCGAUACCGUUCCCGAUACc -3'
miRNA:   3'- -CAGUAUGGGCUAUGGCAAGGGCUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.