miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32836 5' -51.8 NC_007346.1 + 263572 0.66 0.999933
Target:  5'- aCGaaAUCCGAguaCGUAUCCGAUGuCCa -3'
miRNA:   3'- gGCa-UGGGCUaugGCAUGGGCUAU-GG- -5'
32836 5' -51.8 NC_007346.1 + 5751 0.66 0.999914
Target:  5'- aCCGcACaCCGcguUACaCGUACCgugGAUGCCg -3'
miRNA:   3'- -GGCaUG-GGCu--AUG-GCAUGGg--CUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 96841 0.66 0.999914
Target:  5'- aUGUGCCCcuucucAUAUUGUACCCGAa--- -3'
miRNA:   3'- gGCAUGGGc-----UAUGGCAUGGGCUaugg -5'
32836 5' -51.8 NC_007346.1 + 274418 0.66 0.999914
Target:  5'- aCGgcgACCCagccaGGUGCCGUACCgCaGUGCg -3'
miRNA:   3'- gGCa--UGGG-----CUAUGGCAUGG-GcUAUGg -5'
32836 5' -51.8 NC_007346.1 + 257677 0.66 0.99989
Target:  5'- uCCgGUAUgCCGGUcACCGuUACCgCGAUACa -3'
miRNA:   3'- -GG-CAUG-GGCUA-UGGC-AUGG-GCUAUGg -5'
32836 5' -51.8 NC_007346.1 + 238378 0.66 0.999888
Target:  5'- uUCGUcAUCCGAUGCCGaaucuUGCgauggcugaguauUCGAUGCCc -3'
miRNA:   3'- -GGCA-UGGGCUAUGGC-----AUG-------------GGCUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 314109 0.66 0.999874
Target:  5'- ---aACCCGAUAuccauccuuuucaugUCGU-UCCGAUGCCa -3'
miRNA:   3'- ggcaUGGGCUAU---------------GGCAuGGGCUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 274987 0.66 0.999861
Target:  5'- cCCGUugCCcucGCgGUGCCC-AUGCUg -3'
miRNA:   3'- -GGCAugGGcuaUGgCAUGGGcUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 316517 0.66 0.999826
Target:  5'- aCgGUAUCgGGUACgGUAUCgGGUACg -3'
miRNA:   3'- -GgCAUGGgCUAUGgCAUGGgCUAUGg -5'
32836 5' -51.8 NC_007346.1 + 306697 0.66 0.999801
Target:  5'- aCUGUGCCCcuucGCCGUcgccgccgccgccgaGCCCGccGCCc -3'
miRNA:   3'- -GGCAUGGGcua-UGGCA---------------UGGGCuaUGG- -5'
32836 5' -51.8 NC_007346.1 + 204211 0.66 0.999782
Target:  5'- uUCGUGCCU--UGCCGaauaUGCCCauGUACCa -3'
miRNA:   3'- -GGCAUGGGcuAUGGC----AUGGGc-UAUGG- -5'
32836 5' -51.8 NC_007346.1 + 278409 0.67 0.999729
Target:  5'- cCCGUACuuGAUGauGUucgcgucauggaAUCCGAUACa -3'
miRNA:   3'- -GGCAUGggCUAUggCA------------UGGGCUAUGg -5'
32836 5' -51.8 NC_007346.1 + 42048 0.67 0.999665
Target:  5'- aUCGUucGCuuGAauacgGCCGUAUCC-AUGCCa -3'
miRNA:   3'- -GGCA--UGggCUa----UGGCAUGGGcUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 238907 0.67 0.999588
Target:  5'- uUCGaggACUCGAUcACCGUGaCCGAcACCa -3'
miRNA:   3'- -GGCa--UGGGCUA-UGGCAUgGGCUaUGG- -5'
32836 5' -51.8 NC_007346.1 + 131595 0.67 0.999588
Target:  5'- aCCGU-CgCCGAUGCCGauaccACCCcAUGCg -3'
miRNA:   3'- -GGCAuG-GGCUAUGGCa----UGGGcUAUGg -5'
32836 5' -51.8 NC_007346.1 + 9791 0.67 0.999496
Target:  5'- ---gACCCGAUcAUCGUAUaCCGAcGCCa -3'
miRNA:   3'- ggcaUGGGCUA-UGGCAUG-GGCUaUGG- -5'
32836 5' -51.8 NC_007346.1 + 323845 0.67 0.999387
Target:  5'- uUGUACCUGuggaUGUACCCGcgguuGUACCu -3'
miRNA:   3'- gGCAUGGGCuaugGCAUGGGC-----UAUGG- -5'
32836 5' -51.8 NC_007346.1 + 202541 0.67 0.999387
Target:  5'- aCCGacUGCCCuGAUGaCGcAUCUGAUACCg -3'
miRNA:   3'- -GGC--AUGGG-CUAUgGCaUGGGCUAUGG- -5'
32836 5' -51.8 NC_007346.1 + 207715 0.69 0.998206
Target:  5'- -aGUACcgCCGAUACCGgcauCCCGGcgggcaauUGCCc -3'
miRNA:   3'- ggCAUG--GGCUAUGGCau--GGGCU--------AUGG- -5'
32836 5' -51.8 NC_007346.1 + 246267 0.69 0.997525
Target:  5'- aUCGUAUUCGAUGUCGUaaaACCCGGUgaguguaaucACCa -3'
miRNA:   3'- -GGCAUGGGCUAUGGCA---UGGGCUA----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.