miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32839 5' -47.1 NC_007346.1 + 256838 0.66 1
Target:  5'- ----gAAC-CGUUUAUGGGaCCGACCg -3'
miRNA:   3'- uauugUUGaGCAGAUGCCUaGGUUGG- -5'
32839 5' -47.1 NC_007346.1 + 246461 0.66 1
Target:  5'- -cGACAACgucggggucggUGUCUucACGGAUCCGcucgaaauuACCu -3'
miRNA:   3'- uaUUGUUGa----------GCAGA--UGCCUAGGU---------UGG- -5'
32839 5' -47.1 NC_007346.1 + 365271 0.66 1
Target:  5'- gGUAcguCAACUCGUau-CGGAaCCAACg -3'
miRNA:   3'- -UAUu--GUUGAGCAgauGCCUaGGUUGg -5'
32839 5' -47.1 NC_007346.1 + 325647 0.66 1
Target:  5'- --uGCAGCguguuuuggaugaaaUCGUCU-UGGAUCCgAACCu -3'
miRNA:   3'- uauUGUUG---------------AGCAGAuGCCUAGG-UUGG- -5'
32839 5' -47.1 NC_007346.1 + 264282 0.66 1
Target:  5'- -gAGCAGCUCGUCguucgccGCGuGAaucgaguuugcgUCCAACa -3'
miRNA:   3'- uaUUGUUGAGCAGa------UGC-CU------------AGGUUGg -5'
32839 5' -47.1 NC_007346.1 + 259859 0.66 1
Target:  5'- -cGGguGCUUGUCUuugagccacgacaACGGGUacCCGACCu -3'
miRNA:   3'- uaUUguUGAGCAGA-------------UGCCUA--GGUUGG- -5'
32839 5' -47.1 NC_007346.1 + 269872 0.66 1
Target:  5'- gGUGACGAgUUGUCgaguugGCuGAUgCGACCg -3'
miRNA:   3'- -UAUUGUUgAGCAGa-----UGcCUAgGUUGG- -5'
32839 5' -47.1 NC_007346.1 + 252452 0.67 0.999999
Target:  5'- -aAGCAAaUCGUCUACGGugcgUCAucuCCg -3'
miRNA:   3'- uaUUGUUgAGCAGAUGCCua--GGUu--GG- -5'
32839 5' -47.1 NC_007346.1 + 203057 0.67 0.999999
Target:  5'- --uGCAAuCUCGUCaacgucaaAUGGAUCCAgaucGCCa -3'
miRNA:   3'- uauUGUU-GAGCAGa-------UGCCUAGGU----UGG- -5'
32839 5' -47.1 NC_007346.1 + 258993 0.67 0.999999
Target:  5'- -cGACAACUgauuaUACGGAUCUAugCg -3'
miRNA:   3'- uaUUGUUGAgcag-AUGCCUAGGUugG- -5'
32839 5' -47.1 NC_007346.1 + 237272 0.69 0.999987
Target:  5'- -aGACuGCUUGcUCUuuaGCGGGUCCAugUa -3'
miRNA:   3'- uaUUGuUGAGC-AGA---UGCCUAGGUugG- -5'
32839 5' -47.1 NC_007346.1 + 283910 0.69 0.999976
Target:  5'- -aGACGAUUCGUCaguaACaGAUCCAuguaACCg -3'
miRNA:   3'- uaUUGUUGAGCAGa---UGcCUAGGU----UGG- -5'
32839 5' -47.1 NC_007346.1 + 241020 0.69 0.999968
Target:  5'- -cGACGcguugcuCUCGggCUAUGGAUCgAGCCg -3'
miRNA:   3'- uaUUGUu------GAGCa-GAUGCCUAGgUUGG- -5'
32839 5' -47.1 NC_007346.1 + 231150 0.69 0.999957
Target:  5'- uAUAACAGCaCGUCggcGCGGGcCCGGCg -3'
miRNA:   3'- -UAUUGUUGaGCAGa--UGCCUaGGUUGg -5'
32839 5' -47.1 NC_007346.1 + 238361 0.69 0.999957
Target:  5'- gAUGACGGCUCGUCgauuuCGucAUCCGauGCCg -3'
miRNA:   3'- -UAUUGUUGAGCAGau---GCc-UAGGU--UGG- -5'
32839 5' -47.1 NC_007346.1 + 101825 0.7 0.999842
Target:  5'- --uGCAAgUgCGUUguucggACGGAUCCGGCCc -3'
miRNA:   3'- uauUGUUgA-GCAGa-----UGCCUAGGUUGG- -5'
32839 5' -47.1 NC_007346.1 + 171844 0.76 0.987358
Target:  5'- --uACGGCggCGUCUACGGGUCgAACg -3'
miRNA:   3'- uauUGUUGa-GCAGAUGCCUAGgUUGg -5'
32839 5' -47.1 NC_007346.1 + 342736 1.13 0.034256
Target:  5'- gAUAACAACUCGUCUACGGAUCCAACCg -3'
miRNA:   3'- -UAUUGUUGAGCAGAUGCCUAGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.