miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 5' -60.6 NC_007346.1 + 368754 1.06 0.004134
Target:  5'- cAAGCAACACUCCUCCGCCGCCGCCUGg -3'
miRNA:   3'- -UUCGUUGUGAGGAGGCGGCGGCGGAC- -5'
32840 5' -60.6 NC_007346.1 + 58604 0.77 0.312834
Target:  5'- uAGUccuC-CUCCUCCGCCGCCGCCa- -3'
miRNA:   3'- uUCGuu-GuGAGGAGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 187632 0.76 0.354584
Target:  5'- -cGCcacccuCAcCUCCUCCGCCGCCGCCc- -3'
miRNA:   3'- uuCGuu----GU-GAGGAGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 127989 0.71 0.621006
Target:  5'- cAGGCGcCAucugcuucaccauCUCCaCCGCCGCCGCCUc -3'
miRNA:   3'- -UUCGUuGU-------------GAGGaGGCGGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 87155 0.71 0.640895
Target:  5'- uGGCcGCAC-CCUCCGCCGCCcaaCCg- -3'
miRNA:   3'- uUCGuUGUGaGGAGGCGGCGGc--GGac -5'
32840 5' -60.6 NC_007346.1 + 325751 0.71 0.640895
Target:  5'- cGAGCAuuaaaucaacgACGCUCUUgCCGUCGUCGCCa- -3'
miRNA:   3'- -UUCGU-----------UGUGAGGA-GGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 306686 0.71 0.650361
Target:  5'- cGGCAGCguggacuguGCcCCUUCGCCGUCGCCg- -3'
miRNA:   3'- uUCGUUG---------UGaGGAGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 309252 0.7 0.669249
Target:  5'- cGGCAGCGuggacuguguccCUUCgccgucgCCGCCGCCGCCg- -3'
miRNA:   3'- uUCGUUGU------------GAGGa------GGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 349351 0.7 0.688033
Target:  5'- -uGCcuCACgCCaCCGCCGCCGCCg- -3'
miRNA:   3'- uuCGuuGUGaGGaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 187960 0.69 0.715893
Target:  5'- uAAGCcaccauCGCcgCCUCCGCCaucGCCGCCUc -3'
miRNA:   3'- -UUCGuu----GUGa-GGAGGCGG---CGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 308214 0.69 0.725068
Target:  5'- -cGCcGCcauCUCCUCCaccaccauuGCCGCCGCCa- -3'
miRNA:   3'- uuCGuUGu--GAGGAGG---------CGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 137642 0.69 0.734173
Target:  5'- gAGGCGu--UUCCcaCCGCCGCCGCCg- -3'
miRNA:   3'- -UUCGUuguGAGGa-GGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 241440 0.69 0.755702
Target:  5'- aGAGCAACGCgUCgcgcgcgauacaaaUCUGCCGCCGUCUu -3'
miRNA:   3'- -UUCGUUGUG-AGg-------------AGGCGGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 307363 0.69 0.761004
Target:  5'- -cGCcACcaACUCCaCCGCCGCCGCUc- -3'
miRNA:   3'- uuCGuUG--UGAGGaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 239649 0.68 0.769762
Target:  5'- -uGCAacACGCUCCUUgGgcgguuCCGCCGCCUu -3'
miRNA:   3'- uuCGU--UGUGAGGAGgC------GGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 127918 0.68 0.778415
Target:  5'- -cGCcacCACcgccaUCUCCGCCGCCGCCa- -3'
miRNA:   3'- uuCGuu-GUGa----GGAGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 228017 0.68 0.786956
Target:  5'- -cGCAAcCACUCCcauaCCGgcaCCGCCGCCa- -3'
miRNA:   3'- uuCGUU-GUGAGGa---GGC---GGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 57898 0.68 0.803672
Target:  5'- -uGCAAC-CUCCaccaucUCCGCCaCCGCCg- -3'
miRNA:   3'- uuCGUUGuGAGG------AGGCGGcGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 156512 0.67 0.835457
Target:  5'- cAGCAGCAC-CCgCUGCUGCUGCUc- -3'
miRNA:   3'- uUCGUUGUGaGGaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 310935 0.67 0.835457
Target:  5'- -uGCcccCAcCUCCgUCGCCGCCGCCUu -3'
miRNA:   3'- uuCGuu-GU-GAGGaGGCGGCGGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.