miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 349787 0.74 0.410835
Target:  5'- cGGCGGCgGC-GGCGGCGGUG-GCgUGa -3'
miRNA:   3'- -CCGUCGaCGuCCGCCGCCACgUGgAC- -5'
32843 3' -62 NC_007346.1 + 128719 0.74 0.402967
Target:  5'- cGGCGGC-GguGGCGGCGGUGgCGgCg- -3'
miRNA:   3'- -CCGUCGaCguCCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 310719 0.74 0.418797
Target:  5'- gGGUGGC-GCAGGCGGUgugGGUGgGCUUGg -3'
miRNA:   3'- -CCGUCGaCGUCCGCCG---CCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 307749 0.74 0.410835
Target:  5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 188151 0.74 0.395196
Target:  5'- uGGCGGCUGCgaGGGUGGCGGUGgGg--- -3'
miRNA:   3'- -CCGUCGACG--UCCGCCGCCACgUggac -5'
32843 3' -62 NC_007346.1 + 308283 0.74 0.410835
Target:  5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 307348 0.75 0.387522
Target:  5'- aGGCGGUgguggaGCAGGCGGUGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGa-----CGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 307528 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308061 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308334 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308606 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 56813 0.75 0.357823
Target:  5'- gGGCAGCUGgAuuauuuacuGGCGGUaugGGUGCACCa- -3'
miRNA:   3'- -CCGUCGACgU---------CCGCCG---CCACGUGGac -5'
32843 3' -62 NC_007346.1 + 307800 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 401096 1.08 0.002366
Target:  5'- uGGCAGCUGCAGGCGGCGGUGCACCUGc -3'
miRNA:   3'- -CCGUCGACGUCCGCCGCCACGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.