Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
32843 | 3' | -62 | NC_007346.1 | + | 401096 | 1.08 | 0.002366 |
Target: 5'- uGGCAGCUGCAGGCGGCGGUGCACCUGc -3' miRNA: 3'- -CCGUCGACGUCCGCCGCCACGUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307528 | 0.75 | 0.387522 |
Target: 5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3' miRNA: 3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308334 | 0.75 | 0.387522 |
Target: 5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3' miRNA: 3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308606 | 0.75 | 0.387522 |
Target: 5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3' miRNA: 3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307800 | 0.75 | 0.387522 |
Target: 5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3' miRNA: 3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 56813 | 0.75 | 0.357823 |
Target: 5'- gGGCAGCUGgAuuauuuacuGGCGGUaugGGUGCACCa- -3' miRNA: 3'- -CCGUCGACgU---------CCGCCG---CCACGUGGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308061 | 0.75 | 0.387522 |
Target: 5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3' miRNA: 3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307348 | 0.75 | 0.387522 |
Target: 5'- aGGCGGUgguggaGCAGGCGGUGGUGgAgUUGg -3' miRNA: 3'- -CCGUCGa-----CGUCCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 310719 | 0.74 | 0.418797 |
Target: 5'- gGGUGGC-GCAGGCGGUgugGGUGgGCUUGg -3' miRNA: 3'- -CCGUCGaCGUCCGCCG---CCACgUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307749 | 0.74 | 0.410835 |
Target: 5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3' miRNA: 3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 188151 | 0.74 | 0.395196 |
Target: 5'- uGGCGGCUGCgaGGGUGGCGGUGgGg--- -3' miRNA: 3'- -CCGUCGACG--UCCGCCGCCACgUggac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 349787 | 0.74 | 0.410835 |
Target: 5'- cGGCGGCgGC-GGCGGCGGUG-GCgUGa -3' miRNA: 3'- -CCGUCGaCGuCCGCCGCCACgUGgAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 128719 | 0.74 | 0.402967 |
Target: 5'- cGGCGGC-GguGGCGGCGGUGgCGgCg- -3' miRNA: 3'- -CCGUCGaCguCCGCCGCCAC-GUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308283 | 0.74 | 0.410835 |
Target: 5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3' miRNA: 3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 201164 | 0.72 | 0.538984 |
Target: 5'- aGGCGGCUGaguuGGaGGCGGUGCAgaUGg -3' miRNA: 3'- -CCGUCGACgu--CCgCCGCCACGUggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 86611 | 0.72 | 0.503183 |
Target: 5'- cGGCGGuCUGguGGCGuGCGGUccagGCGCUUc -3' miRNA: 3'- -CCGUC-GACguCCGC-CGCCA----CGUGGAc -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308879 | 0.72 | 0.538984 |
Target: 5'- aGGCGGUgguggaGCAGGCGGgGGUGgAgUUGg -3' miRNA: 3'- -CCGUCGa-----CGUCCGCCgCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 310120 | 0.71 | 0.557212 |
Target: 5'- aGGCAGUgGCGgagauGGCGGCGGUGgAgUUGg -3' miRNA: 3'- -CCGUCGaCGU-----CCGCCGCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 189437 | 0.71 | 0.575613 |
Target: 5'- uGGCGGCgacGguGGUGGCGGUGaCGgCg- -3' miRNA: 3'- -CCGUCGa--CguCCGCCGCCAC-GUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307477 | 0.71 | 0.584866 |
Target: 5'- uGGCGGUggaGUAGGCGGUGGUGgAgCa- -3' miRNA: 3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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