miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 39568 0.68 0.732821
Target:  5'- cGGCAGCcacucGguGGCuGuCGGUGCACUa- -3'
miRNA:   3'- -CCGUCGa----CguCCGcC-GCCACGUGGac -5'
32843 3' -62 NC_007346.1 + 50031 0.7 0.650125
Target:  5'- uGGCGacGCUGguGGCGGUGG-GUACg-- -3'
miRNA:   3'- -CCGU--CGACguCCGCCGCCaCGUGgac -5'
32843 3' -62 NC_007346.1 + 56813 0.75 0.357823
Target:  5'- gGGCAGCUGgAuuauuuacuGGCGGUaugGGUGCACCa- -3'
miRNA:   3'- -CCGUCGACgU---------CCGCCG---CCACGUGGac -5'
32843 3' -62 NC_007346.1 + 56887 0.66 0.860036
Target:  5'- cGCAGCUgaagcuggccagagGCAGGCaaCGGaUGCugCUGg -3'
miRNA:   3'- cCGUCGA--------------CGUCCGccGCC-ACGugGAC- -5'
32843 3' -62 NC_007346.1 + 59288 0.69 0.705661
Target:  5'- uGGCGGCggUGguGGCGGUGGUaaagGCGgCg- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA----CGUgGac -5'
32843 3' -62 NC_007346.1 + 59729 0.66 0.825381
Target:  5'- cGGCGGCgguggugaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--------ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 60376 0.7 0.621174
Target:  5'- uGGCGGUgggGUGGGUGGUGGUGgagacgguucggaUGCCUGa -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCAC-------------GUGGAC- -5'
32843 3' -62 NC_007346.1 + 65761 0.71 0.575613
Target:  5'- cGGUuGUUGCAGGCGGUGaUGCGgUUGg -3'
miRNA:   3'- -CCGuCGACGUCCGCCGCcACGUgGAC- -5'
32843 3' -62 NC_007346.1 + 73428 0.67 0.801534
Target:  5'- aGGCAGUccagGCAGGagaGGUuguuGGUGCAgUUGg -3'
miRNA:   3'- -CCGUCGa---CGUCCg--CCG----CCACGUgGAC- -5'
32843 3' -62 NC_007346.1 + 86611 0.72 0.503183
Target:  5'- cGGCGGuCUGguGGCGuGCGGUccagGCGCUUc -3'
miRNA:   3'- -CCGUC-GACguCCGC-CGCCA----CGUGGAc -5'
32843 3' -62 NC_007346.1 + 89948 0.7 0.644525
Target:  5'- cGGUAGCUGCauuuuucuuuggcugAGGCGGUGGaUGaugAUCUGg -3'
miRNA:   3'- -CCGUCGACG---------------UCCGCCGCC-ACg--UGGAC- -5'
32843 3' -62 NC_007346.1 + 128188 0.7 0.603451
Target:  5'- cGGCGGUgGCGgugauGGUGGUGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCGU-----CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 128233 0.67 0.784987
Target:  5'- cGGCGGCgacGguGGUGGCGGagaugGCGgCg- -3'
miRNA:   3'- -CCGUCGa--CguCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 128263 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 128554 0.7 0.64079
Target:  5'- uGGCGGUgauggcgaUGCAgauGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCG--------ACGU---CCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 128719 0.74 0.402967
Target:  5'- cGGCGGC-GguGGCGGCGGUGgCGgCg- -3'
miRNA:   3'- -CCGUCGaCguCCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 138075 0.7 0.650125
Target:  5'- gGGCGGCgGC-GGCGGUGGgaaaCGCCUc -3'
miRNA:   3'- -CCGUCGaCGuCCGCCGCCac--GUGGAc -5'
32843 3' -62 NC_007346.1 + 154259 0.66 0.833045
Target:  5'- gGGCAGguaCUGCcGGCGGUGcUGgACUUGg -3'
miRNA:   3'- -CCGUC---GACGuCCGCCGCcACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 169189 0.69 0.678034
Target:  5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3'
miRNA:   3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5'
32843 3' -62 NC_007346.1 + 177837 0.69 0.678034
Target:  5'- uGCGGgUGCGGGC-GCaGGUGCGgCUGu -3'
miRNA:   3'- cCGUCgACGUCCGcCG-CCACGUgGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.