miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 181839 0.69 0.705661
Target:  5'- nGGCGGCggUGguGGUGGCGGUgGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA-CGUggac -5'
32843 3' -62 NC_007346.1 + 181866 0.69 0.678034
Target:  5'- uGGCGGUggUGguGGUGGCGGUGgCAa-UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCAC-GUggAC- -5'
32843 3' -62 NC_007346.1 + 188043 0.71 0.575613
Target:  5'- uGGCGGC-GUGGGCGGCGGUGgGg--- -3'
miRNA:   3'- -CCGUCGaCGUCCGCCGCCACgUggac -5'
32843 3' -62 NC_007346.1 + 188151 0.74 0.395196
Target:  5'- uGGCGGCUGCgaGGGUGGCGGUGgGg--- -3'
miRNA:   3'- -CCGUCGACG--UCCGCCGCCACgUggac -5'
32843 3' -62 NC_007346.1 + 188891 0.66 0.847911
Target:  5'- uGGCGGCgaUGguGGUGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 188918 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189377 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189437 0.71 0.575613
Target:  5'- uGGCGGCgacGguGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGa--CguCCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 189551 0.69 0.705661
Target:  5'- aGGCGGUga-GGGCGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGacgUCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 189929 0.67 0.784987
Target:  5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 197652 0.66 0.855103
Target:  5'- uGGCGGCgGCGauGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 198084 0.68 0.767982
Target:  5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 198252 0.68 0.767982
Target:  5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 198746 0.66 0.862125
Target:  5'- uGGCGGagaUGguGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCg--ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 198848 0.7 0.659448
Target:  5'- uGGCGGCgGCGauGGCGGCGGgGUGgUUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCaCGUgGAC- -5'
32843 3' -62 NC_007346.1 + 200568 0.66 0.840557
Target:  5'- uGGCGGUgaUGguGGCGGCGGagaugGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCa----CGUggac -5'
32843 3' -62 NC_007346.1 + 201164 0.72 0.538984
Target:  5'- aGGCGGCUGaguuGGaGGCGGUGCAgaUGg -3'
miRNA:   3'- -CCGUCGACgu--CCgCCGCCACGUggAC- -5'
32843 3' -62 NC_007346.1 + 201245 0.66 0.864886
Target:  5'- uGGCGGUUGCAacGGUgguuccggcgaugguGGCGGUGaaaCUGg -3'
miRNA:   3'- -CCGUCGACGU--CCG---------------CCGCCACgugGAC- -5'
32843 3' -62 NC_007346.1 + 208434 0.66 0.847911
Target:  5'- gGGCGG-UGUuucgucacgaaAGGCGGCGG-GUGCCa- -3'
miRNA:   3'- -CCGUCgACG-----------UCCGCCGCCaCGUGGac -5'
32843 3' -62 NC_007346.1 + 261882 0.67 0.81757
Target:  5'- cGGCAGCgguguugaGUAGaGCGGUGuauUGCGCUUGa -3'
miRNA:   3'- -CCGUCGa-------CGUC-CGCCGCc--ACGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.