miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 272449 0.66 0.825381
Target:  5'- uGGCGG-UGguGGCGGUGGUaCACg-- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAcGUGgac -5'
32843 3' -62 NC_007346.1 + 288567 0.68 0.72383
Target:  5'- cGCAGggGguGGUGGUGGUG-AUCUGg -3'
miRNA:   3'- cCGUCgaCguCCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 295148 0.68 0.72383
Target:  5'- cGGCGGC-GgAGGUacuGCGGUGCucCCUGg -3'
miRNA:   3'- -CCGUCGaCgUCCGc--CGCCACGu-GGAC- -5'
32843 3' -62 NC_007346.1 + 306320 0.66 0.833045
Target:  5'- gGGCGGUggagGCGgagauGGCGGCGGUGgAaUUGg -3'
miRNA:   3'- -CCGUCGa---CGU-----CCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 307165 0.69 0.696495
Target:  5'- cGGCGGCgacggGCugggGGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 307195 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 307348 0.75 0.387522
Target:  5'- aGGCGGUgguggaGCAGGCGGUGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGa-----CGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 307372 0.68 0.767982
Target:  5'- uGGCGGCggaGCAGGCGGUGGaGCn---- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCaCGuggac -5'
32843 3' -62 NC_007346.1 + 307477 0.71 0.584866
Target:  5'- uGGCGGUggaGUAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 307528 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 307749 0.74 0.410835
Target:  5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 307800 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 307941 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 308061 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308283 0.74 0.410835
Target:  5'- uGGCGGUggaGCAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 308334 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308539 0.68 0.732821
Target:  5'- gGGguGgaGCAGGCGGaGGUGgAgUUGg -3'
miRNA:   3'- -CCguCgaCGUCCGCCgCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308606 0.75 0.387522
Target:  5'- aGguGgaGCAGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- cCguCgaCGUCCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 308741 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 308879 0.72 0.538984
Target:  5'- aGGCGGUgguggaGCAGGCGGgGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGa-----CGUCCGCCgCCACgUgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.