miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 401096 1.08 0.002366
Target:  5'- uGGCAGCUGCAGGCGGCGGUGCACCUGc -3'
miRNA:   3'- -CCGUCGACGUCCGCCGCCACGUGGAC- -5'
32843 3' -62 NC_007346.1 + 198252 0.68 0.767982
Target:  5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 295148 0.68 0.72383
Target:  5'- cGGCGGC-GgAGGUacuGCGGUGCucCCUGg -3'
miRNA:   3'- -CCGUCGaCgUCCGc--CGCCACGu-GGAC- -5'
32843 3' -62 NC_007346.1 + 288567 0.68 0.72383
Target:  5'- cGCAGggGguGGUGGUGGUG-AUCUGg -3'
miRNA:   3'- cCGUCgaCguCCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 177837 0.69 0.678034
Target:  5'- uGCGGgUGCGGGC-GCaGGUGCGgCUGu -3'
miRNA:   3'- cCGUCgACGUCCGcCG-CCACGUgGAC- -5'
32843 3' -62 NC_007346.1 + 169189 0.69 0.678034
Target:  5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3'
miRNA:   3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5'
32843 3' -62 NC_007346.1 + 197652 0.66 0.855103
Target:  5'- uGGCGGCgGCGauGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 208434 0.66 0.847911
Target:  5'- gGGCGG-UGUuucgucacgaaAGGCGGCGG-GUGCCa- -3'
miRNA:   3'- -CCGUCgACG-----------UCCGCCGCCaCGUGGac -5'
32843 3' -62 NC_007346.1 + 261882 0.67 0.81757
Target:  5'- cGGCAGCgguguugaGUAGaGCGGUGuauUGCGCUUGa -3'
miRNA:   3'- -CCGUCGa-------CGUC-CGCCGCc--ACGUGGAC- -5'
32843 3' -62 NC_007346.1 + 198084 0.68 0.767982
Target:  5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 59288 0.69 0.705661
Target:  5'- uGGCGGCggUGguGGCGGUGGUaaagGCGgCg- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA----CGUgGac -5'
32843 3' -62 NC_007346.1 + 60376 0.7 0.621174
Target:  5'- uGGCGGUgggGUGGGUGGUGGUGgagacgguucggaUGCCUGa -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCAC-------------GUGGAC- -5'
32843 3' -62 NC_007346.1 + 59729 0.66 0.825381
Target:  5'- cGGCGGCgguggugaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--------ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 50031 0.7 0.650125
Target:  5'- uGGCGacGCUGguGGCGGUGG-GUACg-- -3'
miRNA:   3'- -CCGU--CGACguCCGCCGCCaCGUGgac -5'
32843 3' -62 NC_007346.1 + 39568 0.68 0.732821
Target:  5'- cGGCAGCcacucGguGGCuGuCGGUGCACUa- -3'
miRNA:   3'- -CCGUCGa----CguCCGcC-GCCACGUGGac -5'
32843 3' -62 NC_007346.1 + 154259 0.66 0.833045
Target:  5'- gGGCAGguaCUGCcGGCGGUGcUGgACUUGg -3'
miRNA:   3'- -CCGUC---GACGuCCGCCGCcACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 198746 0.66 0.862125
Target:  5'- uGGCGGagaUGguGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCg--ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 198848 0.7 0.659448
Target:  5'- uGGCGGCgGCGauGGCGGCGGgGUGgUUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCaCGUgGAC- -5'
32843 3' -62 NC_007346.1 + 73428 0.67 0.801534
Target:  5'- aGGCAGUccagGCAGGagaGGUuguuGGUGCAgUUGg -3'
miRNA:   3'- -CCGUCGa---CGUCCg--CCG----CCACGUgGAC- -5'
32843 3' -62 NC_007346.1 + 189929 0.67 0.784987
Target:  5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.