miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 308741 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 309985 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 138075 0.7 0.650125
Target:  5'- gGGCGGCgGC-GGCGGUGGgaaaCGCCUc -3'
miRNA:   3'- -CCGUCGaCGuCCGCCGCCac--GUGGAc -5'
32843 3' -62 NC_007346.1 + 201164 0.72 0.538984
Target:  5'- aGGCGGCUGaguuGGaGGCGGUGCAgaUGg -3'
miRNA:   3'- -CCGUCGACgu--CCgCCGCCACGUggAC- -5'
32843 3' -62 NC_007346.1 + 308879 0.72 0.538984
Target:  5'- aGGCGGUgguggaGCAGGCGGgGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGa-----CGUCCGCCgCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 181866 0.69 0.678034
Target:  5'- uGGCGGUggUGguGGUGGCGGUGgCAa-UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCAC-GUggAC- -5'
32843 3' -62 NC_007346.1 + 307165 0.69 0.696495
Target:  5'- cGGCGGCgacggGCugggGGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 188891 0.66 0.847911
Target:  5'- uGGCGGCgaUGguGGUGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 311657 0.66 0.840557
Target:  5'- uGGCGGUggaauUGguGGCGGCGGUaaugGCGa-UGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCA----CGUggAC- -5'
32843 3' -62 NC_007346.1 + 309760 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 311570 0.66 0.833045
Target:  5'- aGGCAGUgGCGGagauuGUGGCGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGaCGUC-----CGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 272449 0.66 0.825381
Target:  5'- uGGCGG-UGguGGCGGUGGUaCACg-- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAcGUGgac -5'
32843 3' -62 NC_007346.1 + 128233 0.67 0.784987
Target:  5'- cGGCGGCgacGguGGUGGCGGagaugGCGgCg- -3'
miRNA:   3'- -CCGUCGa--CguCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 189929 0.67 0.784987
Target:  5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 310246 0.68 0.767982
Target:  5'- uGGCGGCggugGUaaAGGCGGCGGUGguaaUGg -3'
miRNA:   3'- -CCGUCGa---CG--UCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 314696 0.68 0.741738
Target:  5'- uGGCGGUggUGgGGGCGGUGGUGgAUa-- -3'
miRNA:   3'- -CCGUCG--ACgUCCGCCGCCACgUGgac -5'
32843 3' -62 NC_007346.1 + 308539 0.68 0.732821
Target:  5'- gGGguGgaGCAGGCGGaGGUGgAgUUGg -3'
miRNA:   3'- -CCguCgaCGUCCGCCgCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 309730 0.68 0.72383
Target:  5'- uGGCGGCgacggGCugggAGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 181839 0.69 0.705661
Target:  5'- nGGCGGCggUGguGGUGGCGGUgGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA-CGUggac -5'
32843 3' -62 NC_007346.1 + 189551 0.69 0.705661
Target:  5'- aGGCGGUga-GGGCGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGacgUCCGCCGCCACgUggAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.