miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 314696 0.68 0.741738
Target:  5'- uGGCGGUggUGgGGGCGGUGGUGgAUa-- -3'
miRNA:   3'- -CCGUCG--ACgUCCGCCGCCACgUGgac -5'
32843 3' -62 NC_007346.1 + 310246 0.68 0.767982
Target:  5'- uGGCGGCggugGUaaAGGCGGCGGUGguaaUGg -3'
miRNA:   3'- -CCGUCGa---CG--UCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 306320 0.66 0.833045
Target:  5'- gGGCGGUggagGCGgagauGGCGGCGGUGgAaUUGg -3'
miRNA:   3'- -CCGUCGa---CGU-----CCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 349841 0.66 0.840557
Target:  5'- uGGUGGUgaacuuGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGacgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 311657 0.66 0.840557
Target:  5'- uGGCGGUggaauUGguGGCGGCGGUaaugGCGa-UGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCA----CGUggAC- -5'
32843 3' -62 NC_007346.1 + 188891 0.66 0.847911
Target:  5'- uGGCGGCgaUGguGGUGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 200568 0.66 0.840557
Target:  5'- uGGCGGUgaUGguGGCGGCGGagaugGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCa----CGUggac -5'
32843 3' -62 NC_007346.1 + 324768 0.66 0.855103
Target:  5'- cGGUGGUggUGguGGuuGUGGUGUAUCUGc -3'
miRNA:   3'- -CCGUCG--ACguCCgcCGCCACGUGGAC- -5'
32843 3' -62 NC_007346.1 + 311732 0.66 0.855103
Target:  5'- uGGCGG-UGguGGCGGUGGUGgCGgUg- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 56887 0.66 0.860036
Target:  5'- cGCAGCUgaagcuggccagagGCAGGCaaCGGaUGCugCUGg -3'
miRNA:   3'- cCGUCGA--------------CGUCCGccGCC-ACGugGAC- -5'
32843 3' -62 NC_007346.1 + 307195 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 309760 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 307372 0.68 0.767982
Target:  5'- uGGCGGCggaGCAGGCGGUGGaGCn---- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCaCGuggac -5'
32843 3' -62 NC_007346.1 + 188918 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 128263 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189377 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189929 0.67 0.784987
Target:  5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 128233 0.67 0.784987
Target:  5'- cGGCGGCgacGguGGUGGCGGagaugGCGgCg- -3'
miRNA:   3'- -CCGUCGa--CguCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 272449 0.66 0.825381
Target:  5'- uGGCGG-UGguGGCGGUGGUaCACg-- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAcGUGgac -5'
32843 3' -62 NC_007346.1 + 311570 0.66 0.833045
Target:  5'- aGGCAGUgGCGGagauuGUGGCGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGaCGUC-----CGCCGCCACgUgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.