miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 201245 0.66 0.864886
Target:  5'- uGGCGGUUGCAacGGUgguuccggcgaugguGGCGGUGaaaCUGg -3'
miRNA:   3'- -CCGUCGACGU--CCG---------------CCGCCACgugGAC- -5'
32843 3' -62 NC_007346.1 + 272449 0.66 0.825381
Target:  5'- uGGCGG-UGguGGCGGUGGUaCACg-- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAcGUGgac -5'
32843 3' -62 NC_007346.1 + 128233 0.67 0.784987
Target:  5'- cGGCGGCgacGguGGUGGCGGagaugGCGgCg- -3'
miRNA:   3'- -CCGUCGa--CguCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 307165 0.69 0.696495
Target:  5'- cGGCGGCgacggGCugggGGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 189551 0.69 0.705661
Target:  5'- aGGCGGUga-GGGCGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGacgUCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 181839 0.69 0.705661
Target:  5'- nGGCGGCggUGguGGUGGCGGUgGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA-CGUggac -5'
32843 3' -62 NC_007346.1 + 309730 0.68 0.72383
Target:  5'- uGGCGGCgacggGCugggAGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 308539 0.68 0.732821
Target:  5'- gGGguGgaGCAGGCGGaGGUGgAgUUGg -3'
miRNA:   3'- -CCguCgaCGUCCGCCgCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 314696 0.68 0.741738
Target:  5'- uGGCGGUggUGgGGGCGGUGGUGgAUa-- -3'
miRNA:   3'- -CCGUCG--ACgUCCGCCGCCACgUGgac -5'
32843 3' -62 NC_007346.1 + 310246 0.68 0.767982
Target:  5'- uGGCGGCggugGUaaAGGCGGCGGUGguaaUGg -3'
miRNA:   3'- -CCGUCGa---CG--UCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 307372 0.68 0.767982
Target:  5'- uGGCGGCggaGCAGGCGGUGGaGCn---- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCaCGuggac -5'
32843 3' -62 NC_007346.1 + 188918 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 128263 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189377 0.68 0.767982
Target:  5'- uGGCGGUgaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 189929 0.67 0.784987
Target:  5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3'
miRNA:   3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 169189 0.69 0.678034
Target:  5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3'
miRNA:   3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5'
32843 3' -62 NC_007346.1 + 198848 0.7 0.659448
Target:  5'- uGGCGGCgGCGauGGCGGCGGgGUGgUUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCaCGUgGAC- -5'
32843 3' -62 NC_007346.1 + 50031 0.7 0.650125
Target:  5'- uGGCGacGCUGguGGCGGUGG-GUACg-- -3'
miRNA:   3'- -CCGU--CGACguCCGCCGCCaCGUGgac -5'
32843 3' -62 NC_007346.1 + 60376 0.7 0.621174
Target:  5'- uGGCGGUgggGUGGGUGGUGGUGgagacgguucggaUGCCUGa -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCAC-------------GUGGAC- -5'
32843 3' -62 NC_007346.1 + 198746 0.66 0.862125
Target:  5'- uGGCGGagaUGguGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCg--ACguCCGCCGCCACgUggAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.