Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32843 | 3' | -62 | NC_007346.1 | + | 154259 | 0.66 | 0.833045 |
Target: 5'- gGGCAGguaCUGCcGGCGGUGcUGgACUUGg -3' miRNA: 3'- -CCGUC---GACGuCCGCCGCcACgUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 208434 | 0.66 | 0.847911 |
Target: 5'- gGGCGG-UGUuucgucacgaaAGGCGGCGG-GUGCCa- -3' miRNA: 3'- -CCGUCgACG-----------UCCGCCGCCaCGUGGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 197652 | 0.66 | 0.855103 |
Target: 5'- uGGCGGCgGCGauGGUGGUGGUGgAgaUGg -3' miRNA: 3'- -CCGUCGaCGU--CCGCCGCCACgUggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 39568 | 0.68 | 0.732821 |
Target: 5'- cGGCAGCcacucGguGGCuGuCGGUGCACUa- -3' miRNA: 3'- -CCGUCGa----CguCCGcC-GCCACGUGGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 295148 | 0.68 | 0.72383 |
Target: 5'- cGGCGGC-GgAGGUacuGCGGUGCucCCUGg -3' miRNA: 3'- -CCGUCGaCgUCCGc--CGCCACGu-GGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 401096 | 1.08 | 0.002366 |
Target: 5'- uGGCAGCUGCAGGCGGCGGUGCACCUGc -3' miRNA: 3'- -CCGUCGACGUCCGCCGCCACGUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 60376 | 0.7 | 0.621174 |
Target: 5'- uGGCGGUgggGUGGGUGGUGGUGgagacgguucggaUGCCUGa -3' miRNA: 3'- -CCGUCGa--CGUCCGCCGCCAC-------------GUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 50031 | 0.7 | 0.650125 |
Target: 5'- uGGCGacGCUGguGGCGGUGG-GUACg-- -3' miRNA: 3'- -CCGU--CGACguCCGCCGCCaCGUGgac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 198848 | 0.7 | 0.659448 |
Target: 5'- uGGCGGCgGCGauGGCGGCGGgGUGgUUGg -3' miRNA: 3'- -CCGUCGaCGU--CCGCCGCCaCGUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 169189 | 0.69 | 0.678034 |
Target: 5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3' miRNA: 3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 177837 | 0.69 | 0.678034 |
Target: 5'- uGCGGgUGCGGGC-GCaGGUGCGgCUGu -3' miRNA: 3'- cCGUCgACGUCCGcCG-CCACGUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 59288 | 0.69 | 0.705661 |
Target: 5'- uGGCGGCggUGguGGCGGUGGUaaagGCGgCg- -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCA----CGUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 288567 | 0.68 | 0.72383 |
Target: 5'- cGCAGggGguGGUGGUGGUG-AUCUGg -3' miRNA: 3'- cCGUCgaCguCCGCCGCCACgUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 198746 | 0.66 | 0.862125 |
Target: 5'- uGGCGGagaUGguGGUGGUGGUGgAgaUGg -3' miRNA: 3'- -CCGUCg--ACguCCGCCGCCACgUggAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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