Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32843 | 3' | -62 | NC_007346.1 | + | 128233 | 0.67 | 0.784987 |
Target: 5'- cGGCGGCgacGguGGUGGCGGagaugGCGgCg- -3' miRNA: 3'- -CCGUCGa--CguCCGCCGCCa----CGUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 189929 | 0.67 | 0.784987 |
Target: 5'- cGGCGGCgGUgauGGUGGCGGUGaCGgCg- -3' miRNA: 3'- -CCGUCGaCGu--CCGCCGCCAC-GUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 310246 | 0.68 | 0.767982 |
Target: 5'- uGGCGGCggugGUaaAGGCGGCGGUGguaaUGg -3' miRNA: 3'- -CCGUCGa---CG--UCCGCCGCCACguggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 198084 | 0.68 | 0.767982 |
Target: 5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3' miRNA: 3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 198252 | 0.68 | 0.767982 |
Target: 5'- uGGCGGUgauggUGguGGUGGCGGUGgAgaUGg -3' miRNA: 3'- -CCGUCG-----ACguCCGCCGCCACgUggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 189377 | 0.68 | 0.767982 |
Target: 5'- uGGCGGUgaUGguGGCGGUGGUGa---UGg -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 128263 | 0.68 | 0.767982 |
Target: 5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 188918 | 0.68 | 0.767982 |
Target: 5'- uGGCGGUgaUGguGGUGGCGGUGa---UGg -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307372 | 0.68 | 0.767982 |
Target: 5'- uGGCGGCggaGCAGGCGGUGGaGCn---- -3' miRNA: 3'- -CCGUCGa--CGUCCGCCGCCaCGuggac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 314696 | 0.68 | 0.741738 |
Target: 5'- uGGCGGUggUGgGGGCGGUGGUGgAUa-- -3' miRNA: 3'- -CCGUCG--ACgUCCGCCGCCACgUGgac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 39568 | 0.68 | 0.732821 |
Target: 5'- cGGCAGCcacucGguGGCuGuCGGUGCACUa- -3' miRNA: 3'- -CCGUCGa----CguCCGcC-GCCACGUGGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 308539 | 0.68 | 0.732821 |
Target: 5'- gGGguGgaGCAGGCGGaGGUGgAgUUGg -3' miRNA: 3'- -CCguCgaCGUCCGCCgCCACgUgGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 309730 | 0.68 | 0.72383 |
Target: 5'- uGGCGGCgacggGCugggAGGCGGCGGgcucgGCGgCg- -3' miRNA: 3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 288567 | 0.68 | 0.72383 |
Target: 5'- cGCAGggGguGGUGGUGGUG-AUCUGg -3' miRNA: 3'- cCGUCgaCguCCGCCGCCACgUGGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 295148 | 0.68 | 0.72383 |
Target: 5'- cGGCGGC-GgAGGUacuGCGGUGCucCCUGg -3' miRNA: 3'- -CCGUCGaCgUCCGc--CGCCACGu-GGAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 181839 | 0.69 | 0.705661 |
Target: 5'- nGGCGGCggUGguGGUGGCGGUgGCGg--- -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCA-CGUggac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 189551 | 0.69 | 0.705661 |
Target: 5'- aGGCGGUga-GGGCGGCGGUGgAgaUGg -3' miRNA: 3'- -CCGUCGacgUCCGCCGCCACgUggAC- -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 59288 | 0.69 | 0.705661 |
Target: 5'- uGGCGGCggUGguGGCGGUGGUaaagGCGgCg- -3' miRNA: 3'- -CCGUCG--ACguCCGCCGCCA----CGUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 307165 | 0.69 | 0.696495 |
Target: 5'- cGGCGGCgacggGCugggGGGCGGCGGgcucgGCGgCg- -3' miRNA: 3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5' |
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32843 | 3' | -62 | NC_007346.1 | + | 169189 | 0.69 | 0.678034 |
Target: 5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3' miRNA: 3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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