miRNA: 3'- cucACGGUaCCGUUGUCGUGCGGUCu -5'
miRNA: 3'- -CUCAcGGUACCGUUGU--------CGugCGGUCU- -5'
miRNA: 3'- -CUCACGGUACCGUUGUCGUGCGGUCU- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 32852 | 3' | -56 | NC_007383.1 | + | 17793 | 0.66 | 0.845296 |
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Target: 5'- --cUGUCGaGGUGAUAGCAUGCCGGc -3' miRNA: 3'- cucACGGUaCCGUUGUCGUGCGGUCu -5' |
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| 32852 | 3' | -56 | NC_007383.1 | + | 69228 | 0.68 | 0.754106 |
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Target: 5'- aGGGUuCUGUGGCGACGccgguugcGUugGCCGGAg -3' miRNA: 3'- -CUCAcGGUACCGUUGU--------CGugCGGUCU- -5' |
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| 32852 | 3' | -56 | NC_007383.1 | + | 34093 | 1.09 | 0.002032 |
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Target: 5'- cGAGUGCCAUGGCAACAGCACGCCAGAu -3' miRNA: 3'- -CUCACGGUACCGUUGUCGUGCGGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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