miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32852 5' -45.2 NC_007383.1 + 60502 0.66 0.999995
Target:  5'- aGUCGAUGgcCGUGUUG---GUCGAAGa -3'
miRNA:   3'- aCAGCUAU--GCACGAUaagCAGUUUCc -5'
32852 5' -45.2 NC_007383.1 + 54629 0.66 0.999993
Target:  5'- aGUCGAccaAC-UGCUGUUCGg-AAAGGu -3'
miRNA:   3'- aCAGCUa--UGcACGAUAAGCagUUUCC- -5'
32852 5' -45.2 NC_007383.1 + 119223 0.67 0.999973
Target:  5'- aUGUCG--GCGUGUUcgUUGUCAucGa -3'
miRNA:   3'- -ACAGCuaUGCACGAuaAGCAGUuuCc -5'
32852 5' -45.2 NC_007383.1 + 133479 0.67 0.999951
Target:  5'- aUGUCGu--CGUGUUAUUUGcUCAAcauccAGGa -3'
miRNA:   3'- -ACAGCuauGCACGAUAAGC-AGUU-----UCC- -5'
32852 5' -45.2 NC_007383.1 + 73358 0.68 0.999912
Target:  5'- cGUCGAUGauuucGUUGUaUGUCAGAGGu -3'
miRNA:   3'- aCAGCUAUgca--CGAUAaGCAGUUUCC- -5'
32852 5' -45.2 NC_007383.1 + 110581 0.69 0.999486
Target:  5'- aUGUCGAUGcCGUcCUcgUCGUCAGc-- -3'
miRNA:   3'- -ACAGCUAU-GCAcGAuaAGCAGUUucc -5'
32852 5' -45.2 NC_007383.1 + 43126 0.69 0.999486
Target:  5'- cGUCagccgGAUGCG-GCUGaggucaUCGUCGGAGGu -3'
miRNA:   3'- aCAG-----CUAUGCaCGAUa-----AGCAGUUUCC- -5'
32852 5' -45.2 NC_007383.1 + 125519 0.69 0.999486
Target:  5'- cGUCagccgGAUGCG-GCUGaggucaUCGUCGGAGGu -3'
miRNA:   3'- aCAG-----CUAUGCaCGAUa-----AGCAGUUUCC- -5'
32852 5' -45.2 NC_007383.1 + 123125 0.71 0.996348
Target:  5'- aGUgGAUGCGUGUcaagUGUUCGUCGc--- -3'
miRNA:   3'- aCAgCUAUGCACG----AUAAGCAGUuucc -5'
32852 5' -45.2 NC_007383.1 + 105432 0.74 0.98438
Target:  5'- gUGUCGAcGCaaGUGCUGUucgagcaaUCGUCAAAGu -3'
miRNA:   3'- -ACAGCUaUG--CACGAUA--------AGCAGUUUCc -5'
32852 5' -45.2 NC_007383.1 + 34055 1.13 0.018714
Target:  5'- cUGUCGAUACGUGCUAUUCGUCAAAGGa -3'
miRNA:   3'- -ACAGCUAUGCACGAUAAGCAGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.