miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32853 3' -60 NC_007383.1 + 65351 0.66 0.758882
Target:  5'- gACGUcgaacuuuugGUCGGCACGGaCGaCGAUGUCGu -3'
miRNA:   3'- -UGCG----------UAGCUGUGCC-GCgGCUGCGGCu -5'
32853 3' -60 NC_007383.1 + 107951 0.66 0.730602
Target:  5'- -aGCAgUCGAauuuaAUGuCGCCGACGUCGAa -3'
miRNA:   3'- ugCGU-AGCUg----UGCcGCGGCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 80848 0.67 0.705497
Target:  5'- cCGC-UCGAC-CGGCGUcucccuccgcuagaaCGACGCCu- -3'
miRNA:   3'- uGCGuAGCUGuGCCGCG---------------GCUGCGGcu -5'
32853 3' -60 NC_007383.1 + 56419 0.67 0.691805
Target:  5'- uCGCGuUCGGCAU--CGCCGACGuuGGa -3'
miRNA:   3'- uGCGU-AGCUGUGccGCGGCUGCggCU- -5'
32853 3' -60 NC_007383.1 + 115576 0.69 0.572881
Target:  5'- gGCGUA-CGACAacucCGGCccuGCUGGCGCCGc -3'
miRNA:   3'- -UGCGUaGCUGU----GCCG---CGGCUGCGGCu -5'
32853 3' -60 NC_007383.1 + 83686 0.69 0.572881
Target:  5'- cGCGUGUCGAUAuCGGUGCCGuCGauaGAa -3'
miRNA:   3'- -UGCGUAGCUGU-GCCGCGGCuGCgg-CU- -5'
32853 3' -60 NC_007383.1 + 23721 0.69 0.56307
Target:  5'- -gGCAUCGGCggcggaggugGCGGCGauGAUGUCGAc -3'
miRNA:   3'- ugCGUAGCUG----------UGCCGCggCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 44337 0.69 0.553305
Target:  5'- -gGCGUCGGCGCcGUGUCGAUGCgUGAu -3'
miRNA:   3'- ugCGUAGCUGUGcCGCGGCUGCG-GCU- -5'
32853 3' -60 NC_007383.1 + 86014 0.7 0.524338
Target:  5'- aACGCuaaauaCG-CGCGuuuCGCCGACGCCGAc -3'
miRNA:   3'- -UGCGua----GCuGUGCc--GCGGCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 3954 0.7 0.495968
Target:  5'- gACGCugagcUCGACGCuGaGC-CCGACGCUGAa -3'
miRNA:   3'- -UGCGu----AGCUGUG-C-CGcGGCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 43405 0.71 0.450322
Target:  5'- gAUGUggCGGCGgaucucuuCGGCGUCGGCGCCGu -3'
miRNA:   3'- -UGCGuaGCUGU--------GCCGCGGCUGCGGCu -5'
32853 3' -60 NC_007383.1 + 125241 0.71 0.450322
Target:  5'- gAUGUggCGGCGgaucucuuCGGCGUCGGCGCCGu -3'
miRNA:   3'- -UGCGuaGCUGU--------GCCGCGGCUGCGGCu -5'
32853 3' -60 NC_007383.1 + 80949 0.72 0.415523
Target:  5'- -gGCGUCGcucaaGCGGCgGCCGACGUCGc -3'
miRNA:   3'- ugCGUAGCug---UGCCG-CGGCUGCGGCu -5'
32853 3' -60 NC_007383.1 + 55095 0.74 0.300843
Target:  5'- gGCGCugcugcgacauaGUCGAUaACGGCGuuGACGCCa- -3'
miRNA:   3'- -UGCG------------UAGCUG-UGCCGCggCUGCGGcu -5'
32853 3' -60 NC_007383.1 + 43583 0.97 0.00829
Target:  5'- cACGCAU-GACACGGCGCCGACGCCGAa -3'
miRNA:   3'- -UGCGUAgCUGUGCCGCGGCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 125062 1.08 0.001433
Target:  5'- cACGCAUCGACACGGCGCCGACGCCGAa -3'
miRNA:   3'- -UGCGUAGCUGUGCCGCGGCUGCGGCU- -5'
32853 3' -60 NC_007383.1 + 44179 1.08 0.001433
Target:  5'- cACGCAUCGACACGGCGCCGACGCCGAa -3'
miRNA:   3'- -UGCGUAGCUGUGCCGCGGCUGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.