miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32856 3' -57.7 NC_007383.1 + 1301 0.68 0.752013
Target:  5'- cGGCgGUGgUGGCGGCGGUGGCaUCGa -3'
miRNA:   3'- -CUGgCGUgGCUGCUGCCGCUGaAGCa -5'
32856 3' -57.7 NC_007383.1 + 123784 0.68 0.752013
Target:  5'- uGCCGaauCUGuCGGCGGCGcCUUCGa -3'
miRNA:   3'- cUGGCgu-GGCuGCUGCCGCuGAAGCa -5'
32856 3' -57.7 NC_007383.1 + 99867 0.68 0.732834
Target:  5'- cGAgCGCACCGuCGAUGGCaGGaaacgcaUUCGUa -3'
miRNA:   3'- -CUgGCGUGGCuGCUGCCG-CUg------AAGCA- -5'
32856 3' -57.7 NC_007383.1 + 70352 0.68 0.713315
Target:  5'- -uCCGCACuCGACGGuauguCGGCGAacauaaaUUCGUa -3'
miRNA:   3'- cuGGCGUG-GCUGCU-----GCCGCUg------AAGCA- -5'
32856 3' -57.7 NC_007383.1 + 24019 0.68 0.70345
Target:  5'- cGCgUGUACaCGACGACGGCGACa---- -3'
miRNA:   3'- cUG-GCGUG-GCUGCUGCCGCUGaagca -5'
32856 3' -57.7 NC_007383.1 + 56631 0.71 0.562933
Target:  5'- cGGgUGgACCGGCGuCGGUGAUUUCGUc -3'
miRNA:   3'- -CUgGCgUGGCUGCuGCCGCUGAAGCA- -5'
32856 3' -57.7 NC_007383.1 + 103665 0.71 0.562933
Target:  5'- uGCCGCGCCGACGAucguCGG-GAUgUCGg -3'
miRNA:   3'- cUGGCGUGGCUGCU----GCCgCUGaAGCa -5'
32856 3' -57.7 NC_007383.1 + 23717 0.71 0.553027
Target:  5'- cGACgGCAUCGGCGgcggaggugGCGGCGAUgaugUCGa -3'
miRNA:   3'- -CUGgCGUGGCUGC---------UGCCGCUGa---AGCa -5'
32856 3' -57.7 NC_007383.1 + 43393 0.73 0.439682
Target:  5'- cGACCGUacGCCGAugUGGCGGCGGaucuCUUCGg -3'
miRNA:   3'- -CUGGCG--UGGCU--GCUGCCGCU----GAAGCa -5'
32856 3' -57.7 NC_007383.1 + 125253 0.73 0.439682
Target:  5'- cGACCGUacGCCGAugUGGCGGCGGaucuCUUCGg -3'
miRNA:   3'- -CUGGCG--UGGCU--GCUGCCGCU----GAAGCa -5'
32856 3' -57.7 NC_007383.1 + 107668 0.77 0.252943
Target:  5'- --aCGCAUCGAUGACGGCGAaUUCGUu -3'
miRNA:   3'- cugGCGUGGCUGCUGCCGCUgAAGCA- -5'
32856 3' -57.7 NC_007383.1 + 82028 1.08 0.002454
Target:  5'- cGACCGCACCGACGACGGCGACUUCGUg -3'
miRNA:   3'- -CUGGCGUGGCUGCUGCCGCUGAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.