miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32860 3' -55.6 NC_007383.1 + 43319 0.66 0.917913
Target:  5'- ---cGACGUCGGCGACgGCucGuACGGu -3'
miRNA:   3'- cuacUUGCGGCCGCUGgCGuuC-UGCU- -5'
32860 3' -55.6 NC_007383.1 + 125327 0.66 0.917913
Target:  5'- ---cGACGUCGGCGACgGCucGuACGGu -3'
miRNA:   3'- cuacUUGCGGCCGCUGgCGuuC-UGCU- -5'
32860 3' -55.6 NC_007383.1 + 129783 0.66 0.908406
Target:  5'- aAUGAACaauaauacaguuuuuGCCGGCGAUgaaauuCAAGACGAg -3'
miRNA:   3'- cUACUUG---------------CGGCCGCUGgc----GUUCUGCU- -5'
32860 3' -55.6 NC_007383.1 + 127442 0.66 0.899585
Target:  5'- --cGAG-GCCGGCGAcaugaCCGUAcguGACGAa -3'
miRNA:   3'- cuaCUUgCGGCCGCU-----GGCGUu--CUGCU- -5'
32860 3' -55.6 NC_007383.1 + 103886 0.66 0.893002
Target:  5'- gGAUGAGCGCCuaCGuCCGCcGGAnGAc -3'
miRNA:   3'- -CUACUUGCGGccGCuGGCGuUCUgCU- -5'
32860 3' -55.6 NC_007383.1 + 55869 0.67 0.876988
Target:  5'- cGAUauGCGgCGGCGACgGCuuaacgacagucucAAGACGAu -3'
miRNA:   3'- -CUAcuUGCgGCCGCUGgCG--------------UUCUGCU- -5'
32860 3' -55.6 NC_007383.1 + 3413 0.67 0.871879
Target:  5'- cGUGAuuCGCUGGCaucggacucugGGCCGCAGGuuCGAu -3'
miRNA:   3'- cUACUu-GCGGCCG-----------CUGGCGUUCu-GCU- -5'
32860 3' -55.6 NC_007383.1 + 103967 0.67 0.8567
Target:  5'- --cGAAnGUCuGCGGCCGCcAGAUGAa -3'
miRNA:   3'- cuaCUUgCGGcCGCUGGCGuUCUGCU- -5'
32860 3' -55.6 NC_007383.1 + 37015 0.68 0.832404
Target:  5'- --cGAAaccccCGCCGGCGACaGCAAuaucGACGGc -3'
miRNA:   3'- cuaCUU-----GCGGCCGCUGgCGUU----CUGCU- -5'
32860 3' -55.6 NC_007383.1 + 103841 0.7 0.710892
Target:  5'- --cGAACGCCuGcGCGGCCGaCAucccGACGAu -3'
miRNA:   3'- cuaCUUGCGG-C-CGCUGGC-GUu---CUGCU- -5'
32860 3' -55.6 NC_007383.1 + 103928 1.09 0.002837
Target:  5'- aGAUGAACGCCGGCGACCGCAAGACGAa -3'
miRNA:   3'- -CUACUUGCGGCCGCUGGCGUUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.