miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32861 3' -50.4 NC_007383.1 + 75078 0.66 0.995214
Target:  5'- --aGGAUCGGgaCG-ACGacCCGAUGUGGg -3'
miRNA:   3'- guaCUUAGCUg-GCaUGC--GGCUACACC- -5'
32861 3' -50.4 NC_007383.1 + 52970 0.67 0.992563
Target:  5'- --cGGAUCGaACCGUGuCGCCGAc---- -3'
miRNA:   3'- guaCUUAGC-UGGCAU-GCGGCUacacc -5'
32861 3' -50.4 NC_007383.1 + 34002 0.67 0.991339
Target:  5'- -cUGAAUCGugCGUuauaccaGCGCCGAa---- -3'
miRNA:   3'- guACUUAGCugGCA-------UGCGGCUacacc -5'
32861 3' -50.4 NC_007383.1 + 43460 0.67 0.990224
Target:  5'- uCAUGGAUCGACCGUAgGagGAuuUGUa- -3'
miRNA:   3'- -GUACUUAGCUGGCAUgCggCU--ACAcc -5'
32861 3' -50.4 NC_007383.1 + 125186 0.67 0.990224
Target:  5'- uCAUGGAUCGACCGUAgGagGAuuUGUa- -3'
miRNA:   3'- -GUACUUAGCUGGCAUgCggCU--ACAcc -5'
32861 3' -50.4 NC_007383.1 + 37450 0.68 0.979669
Target:  5'- --aGAG-CGAUCGUACGCUauaguGAUGUGa -3'
miRNA:   3'- guaCUUaGCUGGCAUGCGG-----CUACACc -5'
32861 3' -50.4 NC_007383.1 + 79439 0.68 0.977299
Target:  5'- aAUGAAccagacuaaacUCGAgCCGUAUuUCGAUGUGGu -3'
miRNA:   3'- gUACUU-----------AGCU-GGCAUGcGGCUACACC- -5'
32861 3' -50.4 NC_007383.1 + 105300 0.75 0.759806
Target:  5'- aCAUGcAGUCGGCCGUGC-CCGAaaUGGa -3'
miRNA:   3'- -GUAC-UUAGCUGGCAUGcGGCUacACC- -5'
32861 3' -50.4 NC_007383.1 + 44303 0.77 0.67814
Target:  5'- uCAUGAAUCGACCGUACGCUu------ -3'
miRNA:   3'- -GUACUUAGCUGGCAUGCGGcuacacc -5'
32861 3' -50.4 NC_007383.1 + 43385 1.1 0.009078
Target:  5'- uCAUGAAUCGACCGUACGCCGAUGUGGc -3'
miRNA:   3'- -GUACUUAGCUGGCAUGCGGCUACACC- -5'
32861 3' -50.4 NC_007383.1 + 125261 1.1 0.009078
Target:  5'- uCAUGAAUCGACCGUACGCCGAUGUGGc -3'
miRNA:   3'- -GUACUUAGCUGGCAUGCGGCUACACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.