miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32864 5' -50.8 NC_007383.1 + 51815 0.66 0.990091
Target:  5'- ---aAGgAGCGGCCACAGaUAgGUUUu -3'
miRNA:   3'- guugUCgUCGCCGGUGUUaAUgCAGG- -5'
32864 5' -50.8 NC_007383.1 + 133329 0.66 0.987132
Target:  5'- cCAACGGUA-CuGCCGCAggAUUGgGUCCu -3'
miRNA:   3'- -GUUGUCGUcGcCGGUGU--UAAUgCAGG- -5'
32864 5' -50.8 NC_007383.1 + 80939 0.67 0.983534
Target:  5'- ---aAGCGGCGGCCG-----ACGUCg -3'
miRNA:   3'- guugUCGUCGCCGGUguuaaUGCAGg -5'
32864 5' -50.8 NC_007383.1 + 105193 0.67 0.983534
Target:  5'- aCGuCGGCAGCGGCaaaaaaCGCGAgaACGUgCu -3'
miRNA:   3'- -GUuGUCGUCGCCG------GUGUUaaUGCAgG- -5'
32864 5' -50.8 NC_007383.1 + 1300 0.67 0.983136
Target:  5'- gCGGCGGUGGUGGCgGCGGUggcaucgaaguCGUCg -3'
miRNA:   3'- -GUUGUCGUCGCCGgUGUUAau---------GCAGg -5'
32864 5' -50.8 NC_007383.1 + 64028 0.67 0.981472
Target:  5'- gCAACAGCAuGUGGUCuCAGUacAUGUUCa -3'
miRNA:   3'- -GUUGUCGU-CGCCGGuGUUAa-UGCAGG- -5'
32864 5' -50.8 NC_007383.1 + 130434 0.68 0.964517
Target:  5'- gCAACGGCAcCGGCCACGAUaaaccuuUAgGUa- -3'
miRNA:   3'- -GUUGUCGUcGCCGGUGUUA-------AUgCAgg -5'
32864 5' -50.8 NC_007383.1 + 54538 0.68 0.961313
Target:  5'- aUAGCAGUAGCGGUCG--AUgcCGUCg -3'
miRNA:   3'- -GUUGUCGUCGCCGGUguUAauGCAGg -5'
32864 5' -50.8 NC_007383.1 + 81941 0.68 0.961313
Target:  5'- cUAGCAcCAGCGGUagaACAAUUACGacgaCCg -3'
miRNA:   3'- -GUUGUcGUCGCCGg--UGUUAAUGCa---GG- -5'
32864 5' -50.8 NC_007383.1 + 6401 0.69 0.944662
Target:  5'- gAAUAGCAGU-GCCAUAAUaggcaugaaACGUCCg -3'
miRNA:   3'- gUUGUCGUCGcCGGUGUUAa--------UGCAGG- -5'
32864 5' -50.8 NC_007383.1 + 24822 0.69 0.944662
Target:  5'- aCAACAGCAGCaGCaacaACAGagaaaACGUCUc -3'
miRNA:   3'- -GUUGUCGUCGcCGg---UGUUaa---UGCAGG- -5'
32864 5' -50.8 NC_007383.1 + 35402 0.69 0.934805
Target:  5'- gCGACAGCGGUGGCaGCGAUU-CGa-- -3'
miRNA:   3'- -GUUGUCGUCGCCGgUGUUAAuGCagg -5'
32864 5' -50.8 NC_007383.1 + 80641 0.7 0.929485
Target:  5'- gCGACuGCcuccugaggaagAGCGucuGCCGCGAggACGUCCg -3'
miRNA:   3'- -GUUGuCG------------UCGC---CGGUGUUaaUGCAGG- -5'
32864 5' -50.8 NC_007383.1 + 23725 0.7 0.929485
Target:  5'- uCGGCGGCggaGGUGGCgGCGAUgAUGUCg -3'
miRNA:   3'- -GUUGUCG---UCGCCGgUGUUAaUGCAGg -5'
32864 5' -50.8 NC_007383.1 + 32814 0.7 0.918057
Target:  5'- ---gGGCGGCGGCgACAaaGUUGuCGUCg -3'
miRNA:   3'- guugUCGUCGCCGgUGU--UAAU-GCAGg -5'
32864 5' -50.8 NC_007383.1 + 18279 0.71 0.89896
Target:  5'- gCAACAGCAGCcGCCGCcgcgAAUUcacguacaaACGUCg -3'
miRNA:   3'- -GUUGUCGUCGcCGGUG----UUAA---------UGCAGg -5'
32864 5' -50.8 NC_007383.1 + 80871 0.71 0.892082
Target:  5'- gCGGCGGCGGUGGUgGCAGgcGCGgUUCu -3'
miRNA:   3'- -GUUGUCGUCGCCGgUGUUaaUGC-AGG- -5'
32864 5' -50.8 NC_007383.1 + 18433 0.71 0.884953
Target:  5'- -cGCGGCGGCGGCUGCuGUUGCu--- -3'
miRNA:   3'- guUGUCGUCGCCGGUGuUAAUGcagg -5'
32864 5' -50.8 NC_007383.1 + 36957 0.74 0.732166
Target:  5'- aCGAUgaaGGCGGCGGCgACAGUgGCGuaUCCg -3'
miRNA:   3'- -GUUG---UCGUCGCCGgUGUUAaUGC--AGG- -5'
32864 5' -50.8 NC_007383.1 + 41011 0.77 0.562342
Target:  5'- gCAAUAaCGGCGGCUACGAUgauagcgccauUACGUCCu -3'
miRNA:   3'- -GUUGUcGUCGCCGGUGUUA-----------AUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.