miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32865 3' -46.8 NC_007383.1 + 117947 0.66 0.999871
Target:  5'- aGUCGGCcagaGCUUAUGUaaUG-UAGCGACa -3'
miRNA:   3'- aUAGCUG----UGAGUGCA--ACaAUCGUUGc -5'
32865 3' -46.8 NC_007383.1 + 66686 0.66 0.999833
Target:  5'- -cUCGACACUCAa-UUGcUGGCGAa- -3'
miRNA:   3'- auAGCUGUGAGUgcAACaAUCGUUgc -5'
32865 3' -46.8 NC_007383.1 + 23110 0.66 0.999833
Target:  5'- uUAUCGAUACUUGCGagaucAGCAACc -3'
miRNA:   3'- -AUAGCUGUGAGUGCaacaaUCGUUGc -5'
32865 3' -46.8 NC_007383.1 + 66430 0.67 0.999129
Target:  5'- cGUCGAUAC-CGcCGUUGUcaacGGUAACGa -3'
miRNA:   3'- aUAGCUGUGaGU-GCAACAa---UCGUUGC- -5'
32865 3' -46.8 NC_007383.1 + 107873 0.68 0.998686
Target:  5'- cGUCGACAUuacagguuugUUugGUgucGUUGGCGGCa -3'
miRNA:   3'- aUAGCUGUG----------AGugCAa--CAAUCGUUGc -5'
32865 3' -46.8 NC_007383.1 + 1331 0.69 0.996687
Target:  5'- cGUCGACAUUgGCGgcGgaggUGGUGACGc -3'
miRNA:   3'- aUAGCUGUGAgUGCaaCa---AUCGUUGC- -5'
32865 3' -46.8 NC_007383.1 + 90131 0.69 0.996077
Target:  5'- --aCGugACUCugGUuaUGcUUGGCGAUGa -3'
miRNA:   3'- auaGCugUGAGugCA--AC-AAUCGUUGC- -5'
32865 3' -46.8 NC_007383.1 + 66666 0.7 0.991504
Target:  5'- aUGUCGACugUgcCGCuGUUGUUGGUGGCc -3'
miRNA:   3'- -AUAGCUGugA--GUG-CAACAAUCGUUGc -5'
32865 3' -46.8 NC_007383.1 + 121310 0.74 0.932432
Target:  5'- cUGUCGACACUUcauuugcgcagGCGUUGUcGGCuGCGc -3'
miRNA:   3'- -AUAGCUGUGAG-----------UGCAACAaUCGuUGC- -5'
32865 3' -46.8 NC_007383.1 + 43161 1.08 0.022461
Target:  5'- uUAUCGACACUCACGUUGUUAGCAACGu -3'
miRNA:   3'- -AUAGCUGUGAGUGCAACAAUCGUUGC- -5'
32865 3' -46.8 NC_007383.1 + 125484 1.08 0.022461
Target:  5'- uUAUCGACACUCACGUUGUUAGCAACGu -3'
miRNA:   3'- -AUAGCUGUGAGUGCAACAAUCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.