miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32865 5' -43.4 NC_007383.1 + 115793 0.66 1
Target:  5'- aGCA----UGCAUUcUGUCGACGGg- -3'
miRNA:   3'- gCGUuauaACGUAGuACAGUUGCUau -5'
32865 5' -43.4 NC_007383.1 + 72445 0.66 0.999999
Target:  5'- gCGCGAgaaca-GUgGUGUCAACGGUAu -3'
miRNA:   3'- -GCGUUauaacgUAgUACAGUUGCUAU- -5'
32865 5' -43.4 NC_007383.1 + 1366 0.67 0.999998
Target:  5'- uCGUAAUuuguguUUGCGUCGg--CGACGAUGg -3'
miRNA:   3'- -GCGUUAu-----AACGUAGUacaGUUGCUAU- -5'
32865 5' -43.4 NC_007383.1 + 48790 0.67 0.99999
Target:  5'- gGCGGUGc--CAUCGUcGUCGACGGUGu -3'
miRNA:   3'- gCGUUAUaacGUAGUA-CAGUUGCUAU- -5'
32865 5' -43.4 NC_007383.1 + 11802 0.68 0.999985
Target:  5'- gGCGauacGUAUUGCAUCA--UUGACGGUGg -3'
miRNA:   3'- gCGU----UAUAACGUAGUacAGUUGCUAU- -5'
32865 5' -43.4 NC_007383.1 + 125530 0.68 0.999979
Target:  5'- aUGCAAUAUUGCGUCAgccGgauGCGGc- -3'
miRNA:   3'- -GCGUUAUAACGUAGUa--CaguUGCUau -5'
32865 5' -43.4 NC_007383.1 + 43115 0.68 0.999979
Target:  5'- aUGCAAUAUUGCGUCAgccGgauGCGGc- -3'
miRNA:   3'- -GCGUUAUAACGUAGUa--CaguUGCUau -5'
32865 5' -43.4 NC_007383.1 + 65364 0.7 0.999778
Target:  5'- aCGCAAUGUgUGUAUCGaaacgcaaccUGUCGACGuUAa -3'
miRNA:   3'- -GCGUUAUA-ACGUAGU----------ACAGUUGCuAU- -5'
32865 5' -43.4 NC_007383.1 + 98354 0.71 0.99907
Target:  5'- aCGCAAUAUUGuCAUU-UGUCAugGCGAa- -3'
miRNA:   3'- -GCGUUAUAAC-GUAGuACAGU--UGCUau -5'
32865 5' -43.4 NC_007383.1 + 125302 0.74 0.991807
Target:  5'- uGCAAUAUUGCGUCAgccgGUC-ACGu-- -3'
miRNA:   3'- gCGUUAUAACGUAGUa---CAGuUGCuau -5'
32865 5' -43.4 NC_007383.1 + 43344 0.74 0.991807
Target:  5'- uGCAAUAUUGCGUCAgccgGUC-ACGu-- -3'
miRNA:   3'- gCGUUAUAACGUAGUa---CAGuUGCuau -5'
32865 5' -43.4 NC_007383.1 + 125205 0.74 0.990507
Target:  5'- aUGCAAUAUUGCGUCAgccggauguuUGUCAccCGAUu -3'
miRNA:   3'- -GCGUUAUAACGUAGU----------ACAGUu-GCUAu -5'
32865 5' -43.4 NC_007383.1 + 43441 0.74 0.990507
Target:  5'- aUGCAAUAUUGCGUCAgccggauguuUGUCAccCGAUu -3'
miRNA:   3'- -GCGUUAUAACGUAGU----------ACAGUu-GCUAu -5'
32865 5' -43.4 NC_007383.1 + 43262 0.78 0.946063
Target:  5'- aCGCAAUAUUGCAUCAUGUUu------ -3'
miRNA:   3'- -GCGUUAUAACGUAGUACAGuugcuau -5'
32865 5' -43.4 NC_007383.1 + 125352 0.86 0.614136
Target:  5'- aCGCAAUAUUGCAUCAUguuuucgucgacGUCGGCGAc- -3'
miRNA:   3'- -GCGUUAUAACGUAGUA------------CAGUUGCUau -5'
32865 5' -43.4 NC_007383.1 + 43294 0.86 0.614136
Target:  5'- aCGCAAUAUUGCAUCAUguuuucgucgacGUCGGCGAc- -3'
miRNA:   3'- -GCGUUAUAACGUAGUA------------CAGUUGCUau -5'
32865 5' -43.4 NC_007383.1 + 125384 0.88 0.502208
Target:  5'- aCGCAAUAUUGCAUCAUGUUuuugucgguGACGAUu -3'
miRNA:   3'- -GCGUUAUAACGUAGUACAG---------UUGCUAu -5'
32865 5' -43.4 NC_007383.1 + 125447 1.1 0.036719
Target:  5'- aCGCAAUAUUGCAUCAUGUCAACGAUAa -3'
miRNA:   3'- -GCGUUAUAACGUAGUACAGUUGCUAU- -5'
32865 5' -43.4 NC_007383.1 + 43198 1.1 0.036719
Target:  5'- aCGCAAUAUUGCAUCAUGUCAACGAUAa -3'
miRNA:   3'- -GCGUUAUAACGUAGUACAGUUGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.