miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32867 5' -50 NC_007383.1 + 1241 0.66 0.993709
Target:  5'- gGGCGgagGUGGUGGCGGAGgCGGuaucaaGGACAUc -3'
miRNA:   3'- -CUGU---UACCGUCGCUUUgGCU------UCUGUA- -5'
32867 5' -50 NC_007383.1 + 117740 0.66 0.990306
Target:  5'- gGAUuuUGGCAauCGAuuuuGCCGAAGGCAUc -3'
miRNA:   3'- -CUGuuACCGUc-GCUu---UGGCUUCUGUA- -5'
32867 5' -50 NC_007383.1 + 23720 0.67 0.985604
Target:  5'- cGGCAucGGCGGCGGAGgUGgcGGCGa -3'
miRNA:   3'- -CUGUuaCCGUCGCUUUgGCuuCUGUa -5'
32867 5' -50 NC_007383.1 + 1301 0.67 0.979329
Target:  5'- cGGCGgugGUGGCGGCGGuggcAUCGAAGuCGUn -3'
miRNA:   3'- -CUGU---UACCGUCGCUu---UGGCUUCuGUA- -5'
32867 5' -50 NC_007383.1 + 27050 0.71 0.910276
Target:  5'- --aAAUGGCAGCGAAGaCGAuGACGa -3'
miRNA:   3'- cugUUACCGUCGCUUUgGCUuCUGUa -5'
32867 5' -50 NC_007383.1 + 1334 0.72 0.866976
Target:  5'- cGACAuUGGCGGCGGAGgUGguGACGc -3'
miRNA:   3'- -CUGUuACCGUCGCUUUgGCuuCUGUa -5'
32867 5' -50 NC_007383.1 + 1307 0.74 0.776551
Target:  5'- cGACAAUuGCGGCGgcGCCGAuAGACGc -3'
miRNA:   3'- -CUGUUAcCGUCGCuuUGGCU-UCUGUa -5'
32867 5' -50 NC_007383.1 + 35397 0.77 0.584256
Target:  5'- aGCGGUGGCAGCGAuucgaguAUgGAAGACAa -3'
miRNA:   3'- cUGUUACCGUCGCUu------UGgCUUCUGUa -5'
32867 5' -50 NC_007383.1 + 67252 1.06 0.01244
Target:  5'- cGACAAUGGCAGCGAAACCGAAGACAUc -3'
miRNA:   3'- -CUGUUACCGUCGCUUUGGCUUCUGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.