Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32869 | 3' | -43.7 | NC_007383.1 | + | 84485 | 1.08 | 0.046119 |
Target: 5'- aCGACAUCGGCAUCGUUUAAACGAAAAu -3' miRNA: 3'- -GCUGUAGCCGUAGCAAAUUUGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 94634 | 0.66 | 1 |
Target: 5'- aUGGCAUCGGguUCGUcgu--CGAu-- -3' miRNA: 3'- -GCUGUAGCCguAGCAaauuuGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 119932 | 0.66 | 0.999999 |
Target: 5'- aGGCGUCGaGCGU-GUUUcgcAAGCGAGGu -3' miRNA: 3'- gCUGUAGC-CGUAgCAAA---UUUGCUUUu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 43424 | 0.67 | 0.999997 |
Target: 5'- uCGGCGUCGGCGcCGUgucgaugcgugaucGAACGAu-- -3' miRNA: 3'- -GCUGUAGCCGUaGCAaa------------UUUGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 61774 | 0.67 | 0.999997 |
Target: 5'- -uAUAUCGGUAauUUGUUUGGGCGAu-- -3' miRNA: 3'- gcUGUAGCCGU--AGCAAAUUUGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 43318 | 0.68 | 0.999973 |
Target: 5'- uCGACGUCGGCGacggcUCGUacgguuGCGAc-- -3' miRNA: 3'- -GCUGUAGCCGU-----AGCAaauu--UGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 82015 | 0.69 | 0.999908 |
Target: 5'- uGGCGUCGGgAUCG-----GCGAGAAg -3' miRNA: 3'- gCUGUAGCCgUAGCaaauuUGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 105190 | 0.7 | 0.99962 |
Target: 5'- aUGACGUCGGCAgCGgcaaaaaacGCGAGAAc -3' miRNA: 3'- -GCUGUAGCCGUaGCaaauu----UGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 68911 | 0.7 | 0.999551 |
Target: 5'- cCGACGaCGGCAcgauacgcguuaaUCGggUAAACGAAc- -3' miRNA: 3'- -GCUGUaGCCGU-------------AGCaaAUUUGCUUuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 85844 | 0.72 | 0.998389 |
Target: 5'- aGAgGUCGGCGUCGgcgAAACGc--- -3' miRNA: 3'- gCUgUAGCCGUAGCaaaUUUGCuuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 23713 | 0.72 | 0.998043 |
Target: 5'- gCGGCGaCGGCAUCGgc--GGCGGAGGu -3' miRNA: 3'- -GCUGUaGCCGUAGCaaauUUGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 80788 | 0.74 | 0.992387 |
Target: 5'- gCGACGUCGGCcgcCGcUUGAGCGAc-- -3' miRNA: 3'- -GCUGUAGCCGua-GCaAAUUUGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 84616 | 0.67 | 0.999997 |
Target: 5'- gCGucCAUCGGCGUCGcc--GACGAc-- -3' miRNA: 3'- -GCu-GUAGCCGUAGCaaauUUGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 60191 | 0.67 | 0.999993 |
Target: 5'- aCGACAUCGGCccuGUCGU-----CGAGu- -3' miRNA: 3'- -GCUGUAGCCG---UAGCAaauuuGCUUuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 117719 | 0.67 | 0.99999 |
Target: 5'- cCGAa---GGCAUCGgUUUAAACGAu-- -3' miRNA: 3'- -GCUguagCCGUAGC-AAAUUUGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 57680 | 0.68 | 0.999986 |
Target: 5'- aGACGUUGGUAg-GUUU-AACGAAAAc -3' miRNA: 3'- gCUGUAGCCGUagCAAAuUUGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 125328 | 0.68 | 0.999973 |
Target: 5'- uCGACGUCGGCGacggcUCGUacgguuGCGAc-- -3' miRNA: 3'- -GCUGUAGCCGU-----AGCAaauu--UGCUuuu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 20646 | 0.68 | 0.999973 |
Target: 5'- uGACAaUGGCGUCGgcgacAACGGAAc -3' miRNA: 3'- gCUGUaGCCGUAGCaaau-UUGCUUUu -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 81026 | 0.73 | 0.995976 |
Target: 5'- gGGCGgcaGGCGUCGUUcuAGCGGAGGg -3' miRNA: 3'- gCUGUag-CCGUAGCAAauUUGCUUUU- -5' |
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32869 | 3' | -43.7 | NC_007383.1 | + | 44339 | 0.67 | 0.999998 |
Target: 5'- uCGGCGUCGGCGcCGUgu---CGAu-- -3' miRNA: 3'- -GCUGUAGCCGUaGCAaauuuGCUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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