miRNA: 3'- uuauCGCAG----UGAG-CGCu------GCGCGGUGG- -5'
miRNA: 3'- uuauCGCAGUGagCGCUGCGc---GGUGG- -5'
miRNA: 3'- uuaUCGcaGUGAGcgCU-GCGCGGUGG- -5'
miRNA: 3'- -UUAUCGCAGUGaGcGCUGCGCGgUGG- -5'
miRNA: 3'- -UUAUCGCAGUGAGCGCUGCGCGGUGG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32894 | 5' | -56 | NC_007448.1 | + | 748 | 0.66 | 0.316582 |
|
Target: 5'- ---cGCGUUaaguGCUCgGCGugcguugUGCGCCGCCg -3' miRNA: 3'- uuauCGCAG----UGAG-CGCu------GCGCGGUGG- -5' |
|||||||
| 32894 | 5' | -56 | NC_007448.1 | + | 6408 | 0.68 | 0.233425 |
|
Target: 5'- ---cGCGUCGCgaGUGACGCuauuCCACCu -3' miRNA: 3'- uuauCGCAGUGagCGCUGCGc---GGUGG- -5' |
|||||||
| 32894 | 5' | -56 | NC_007448.1 | + | 829 | 0.68 | 0.226854 |
|
Target: 5'- --gGGCuaCGCUCuuGAcCGCGCCACCg -3' miRNA: 3'- uuaUCGcaGUGAGcgCU-GCGCGGUGG- -5' |
|||||||
| 32894 | 5' | -56 | NC_007448.1 | + | 8609 | 0.74 | 0.081313 |
|
Target: 5'- aAGUGGCGUCGCcC-CGACGUGCaGCCa -3' miRNA: 3'- -UUAUCGCAGUGaGcGCUGCGCGgUGG- -5' |
|||||||
| 32894 | 5' | -56 | NC_007448.1 | + | 6445 | 1.09 | 0.000161 |
|
Target: 5'- gAAUAGCGUCACUCGCGACGCGCCACCc -3' miRNA: 3'- -UUAUCGCAGUGAGCGCUGCGCGGUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home