miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
329 3' -51.7 AC_000010.1 + 15570 0.66 0.749126
Target:  5'- uGCGGCUcuggcguCAGUAACGGUCACGc--- -3'
miRNA:   3'- uCGUCGGu------GUCGUUGUCGGUGUuuuc -5'
329 3' -51.7 AC_000010.1 + 1589 0.66 0.737817
Target:  5'- uGGuUAGCuCACAGCAGCuugcuGCCAUccauGGAGg -3'
miRNA:   3'- -UC-GUCG-GUGUCGUUGu----CGGUGu---UUUC- -5'
329 3' -51.7 AC_000010.1 + 5398 0.66 0.737817
Target:  5'- uGGCAGgCAgGGCAguACAGaCACuuGAGg -3'
miRNA:   3'- -UCGUCgGUgUCGU--UGUCgGUGuuUUC- -5'
329 3' -51.7 AC_000010.1 + 11304 0.66 0.703199
Target:  5'- uGCGGCCAaccUAGUAuCAGCCuACGAGcAGa -3'
miRNA:   3'- uCGUCGGU---GUCGUuGUCGG-UGUUU-UC- -5'
329 3' -51.7 AC_000010.1 + 29374 0.66 0.703199
Target:  5'- gAGCGaCCAUaAGUGACAGCUGCAAGGc -3'
miRNA:   3'- -UCGUcGGUG-UCGUUGUCGGUGUUUUc -5'
329 3' -51.7 AC_000010.1 + 23675 0.67 0.696175
Target:  5'- uGGcCAGCCGCggaggaaaucagucaAGCGACcGCCACcGGGAGc -3'
miRNA:   3'- -UC-GUCGGUG---------------UCGUUGuCGGUG-UUUUC- -5'
329 3' -51.7 AC_000010.1 + 16146 0.67 0.691478
Target:  5'- cGGUugGGCCAUguuGGCAAUGGCCGCu---- -3'
miRNA:   3'- -UCG--UCGGUG---UCGUUGUCGGUGuuuuc -5'
329 3' -51.7 AC_000010.1 + 13423 0.67 0.644062
Target:  5'- uGCuGUCGCAGCggUgcccgaGGCCGCAAGu- -3'
miRNA:   3'- uCGuCGGUGUCGuuG------UCGGUGUUUuc -5'
329 3' -51.7 AC_000010.1 + 26070 0.67 0.644062
Target:  5'- cGGCAGCgGagacaAGCAA-GGCCACAGAc- -3'
miRNA:   3'- -UCGUCGgUg----UCGUUgUCGGUGUUUuc -5'
329 3' -51.7 AC_000010.1 + 11027 0.68 0.620223
Target:  5'- uGCAGCUGCAGU---AGUUACAGGAGc -3'
miRNA:   3'- uCGUCGGUGUCGuugUCGGUGUUUUC- -5'
329 3' -51.7 AC_000010.1 + 25514 0.68 0.608316
Target:  5'- gAGCAGagauUACAGCGGCAGUgGCAc--- -3'
miRNA:   3'- -UCGUCg---GUGUCGUUGUCGgUGUuuuc -5'
329 3' -51.7 AC_000010.1 + 1935 0.68 0.608316
Target:  5'- --aAGCUACAGCAGCAGCaguucuacCAGGGGu -3'
miRNA:   3'- ucgUCGGUGUCGUUGUCGgu------GUUUUC- -5'
329 3' -51.7 AC_000010.1 + 17409 0.68 0.584586
Target:  5'- uGCGacGCCACAgGCGGCGGCgcgcuaucaGCAAGAGg -3'
miRNA:   3'- uCGU--CGGUGU-CGUUGUCGg--------UGUUUUC- -5'
329 3' -51.7 AC_000010.1 + 32792 0.69 0.572785
Target:  5'- cGCAGCCGCAGCAGuuGgacugugaaaCCACcuuGAAAGa -3'
miRNA:   3'- uCGUCGGUGUCGUUguC----------GGUG---UUUUC- -5'
329 3' -51.7 AC_000010.1 + 17110 0.7 0.492301
Target:  5'- cGCAGCCGgAGCAGUAcuucccgccgucGCCGCAAAAc -3'
miRNA:   3'- uCGUCGGUgUCGUUGU------------CGGUGUUUUc -5'
329 3' -51.7 AC_000010.1 + 8838 0.71 0.448689
Target:  5'- cGCGGCCACcgucgagagAGCA--GGCCGCGGAGa -3'
miRNA:   3'- uCGUCGGUG---------UCGUugUCGGUGUUUUc -5'
329 3' -51.7 AC_000010.1 + 18249 0.71 0.407299
Target:  5'- gAGCAGgCGCuGCAGCAGCaGgGGGAGg -3'
miRNA:   3'- -UCGUCgGUGuCGUUGUCGgUgUUUUC- -5'
329 3' -51.7 AC_000010.1 + 10983 0.72 0.38752
Target:  5'- uGCAGCUGCAGCcguCAGCgGCGcgGGa -3'
miRNA:   3'- uCGUCGGUGUCGuu-GUCGgUGUuuUC- -5'
329 3' -51.7 AC_000010.1 + 3677 0.72 0.368385
Target:  5'- uGCAGCUGCAGCuGCuGCCGCu---- -3'
miRNA:   3'- uCGUCGGUGUCGuUGuCGGUGuuuuc -5'
329 3' -51.7 AC_000010.1 + 7960 0.74 0.298509
Target:  5'- cAGaCGGCCGCAGUAcucGCAGCgCGCAcgGGa -3'
miRNA:   3'- -UC-GUCGGUGUCGU---UGUCG-GUGUuuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.