Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
329 | 5' | -52.6 | AC_000010.1 | + | 16117 | 0.66 | 0.697256 |
Target: 5'- cUGCUgCaGUGGCUGC-GCGcCUGCGGg -3' miRNA: 3'- -ACGAgGaCAUUGAUGaCGUcGACGUC- -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 34339 | 0.67 | 0.591124 |
Target: 5'- uUGCUCCUGUGucacCUGCAGCa---- -3' miRNA: 3'- -ACGAGGACAUugauGACGUCGacguc -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 11193 | 0.68 | 0.584069 |
Target: 5'- cGCUCCUGUcccugaacagguuCUGCUGCGGCacGUAc -3' miRNA: 3'- aCGAGGACAuu-----------GAUGACGUCGa-CGUc -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 3660 | 0.69 | 0.520447 |
Target: 5'- aGCUCUucacccuUGgauGCaGCUGCAGCUGCu- -3' miRNA: 3'- aCGAGG-------ACau-UGaUGACGUCGACGuc -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 10985 | 0.71 | 0.384407 |
Target: 5'- cUGUUgCUGUGGCUGCUGCugagaagggGGCUGUu- -3' miRNA: 3'- -ACGAgGACAUUGAUGACG---------UCGACGuc -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 1873 | 0.72 | 0.356291 |
Target: 5'- ---cCCUGguagAACUGCUGCuGCUGUAGc -3' miRNA: 3'- acgaGGACa---UUGAUGACGuCGACGUC- -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 32730 | 0.74 | 0.237999 |
Target: 5'- gGUUUCacaGUccAACUGCUGCGGCUGCGGc -3' miRNA: 3'- aCGAGGa--CA--UUGAUGACGUCGACGUC- -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 11042 | 0.75 | 0.212561 |
Target: 5'- cGCgCCgcUGACgGCUGCAGCUGCAGu -3' miRNA: 3'- aCGaGGacAUUGaUGACGUCGACGUC- -5' |
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329 | 5' | -52.6 | AC_000010.1 | + | 10968 | 0.99 | 0.004 |
Target: 5'- cUGCUCCUGU-ACUACUGCAGCUGCAGc -3' miRNA: 3'- -ACGAGGACAuUGAUGACGUCGACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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